Query gi|254780318|ref|YP_003064731.1| ribosomal protein L20 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 123
No_of_seqs 121 out of 1268
Neff 4.5
Searched_HMMs 33803
Date Wed Jun 1 12:02:40 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780318.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >2ftc_L MRPL20 protein; mitoch 100.0 0 0 312.7 14.6 115 1-116 2-116 (118)
2 >2ghj_A 50S ribosomal protein 100.0 0 0 314.0 11.9 117 3-120 2-118 (118)
3 >2j01_U 50S ribosomal protein 100.0 3.4E-32 1E-36 208.7 5.7 72 47-118 1-72 (72)
4 >3bbo_S Ribosomal protein L20; 100.0 1.8E-31 5.3E-36 204.4 8.3 74 1-74 1-74 (74)
5 >3i1n_Q 50S ribosomal protein 100.0 1.8E-30 5.3E-35 198.6 7.0 69 50-118 1-69 (69)
6 >2zjr_N 50S ribosomal protein 100.0 1.9E-29 5.5E-34 192.7 6.1 67 52-118 1-67 (67)
7 >2zjr_N 50S ribosomal protein 99.7 1.8E-18 5.4E-23 128.4 5.2 51 1-51 1-51 (51)
8 >3er7_A Uncharacterized NTF2-l 52.9 8.2 0.00024 19.2 2.0 23 90-112 8-31 (131)
9 >2grj_A Dephospho-COA kinase; 52.6 17 0.00051 17.3 4.7 33 86-118 25-57 (66)
10 >3e7l_A Transcriptional regula 50.1 18 0.00054 17.1 3.4 28 64-91 34-61 (63)
11 >1uf9_A TT1252 protein; P-loop 46.5 22 0.00064 16.7 4.3 33 86-118 24-56 (67)
12 >2f6r_A COA synthase, bifuncti 45.8 22 0.00066 16.6 4.7 45 73-117 12-60 (75)
13 >1eto_A FIS, factor for invers 45.4 23 0.00067 16.6 3.6 26 64-89 28-53 (53)
14 >2cob_A LCOR protein; MLR2, KI 44.6 23 0.00069 16.5 3.3 27 64-90 32-58 (70)
15 >1vht_A Dephospho-COA kinase; 41.5 16 0.00048 17.5 2.1 22 82-103 15-36 (36)
16 >2ee7_A Sperm flagellar protei 40.3 22 0.00066 16.7 2.6 46 75-120 28-74 (80)
17 >1g2h_A Transcriptional regula 35.6 32 0.00096 15.7 2.9 26 64-89 35-60 (61)
18 >2if2_A Dephospho-COA kinase; 34.1 30 0.00089 15.9 2.5 42 75-116 15-60 (72)
19 >2p9x_A Hypothetical protein P 27.6 33 0.00098 15.6 1.8 47 59-113 6-56 (99)
20 >1ku9_A Hypothetical protein M 26.0 48 0.0014 14.7 8.7 61 55-115 5-67 (88)
21 >2a6h_C DNA-directed RNA polym 25.0 38 0.0011 15.3 1.7 14 102-115 4-17 (42)
22 >1i1g_A Transcriptional regula 20.0 44 0.0013 14.9 1.2 25 89-113 4-28 (54)
No 1
>>2ftc_L MRPL20 protein; mitochondrial ribosome, large ribosomal subunit, ribosomal RNA; 12.10A {Bos taurus} (L:)
Probab=100.00 E-value=0 Score=312.68 Aligned_cols=115 Identities=37% Similarity=0.516 Sum_probs=112.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
Q ss_conf 98775665556899899997413156452369999999999999987469988999999999867799997189999999
Q gi|254780318|r 1 MTRVKRGVVSSAKHKKVLKSAKGFYGRRKNTIRAAKAAVDRSQQYAYRDRRVKKRDFRSLWIQRINAAVRVYDLNYSQFI 80 (123)
Q Consensus 1 M~Rvk~g~~~~~rrkkilk~akGfrG~r~~~~r~A~~~v~kAl~yayrdRk~kKr~fR~LWI~RINAa~r~~g~sYS~fi 80 (123)
|+|. +|+++++|||+||++|+||+|++++||++|+|+|+|||+|||+||+.+||+||+|||+|||||+|++|+|||+||
T Consensus 2 ~~r~-Rg~~~~~Rrkkilk~AkGfrG~~s~~~r~A~~~v~kAl~yayr~Rk~kKR~fR~LWI~RINAa~r~~g~sYs~fi 80 (118)
T 2ftc_L 2 WLRN-RVTDRYFRIQEVLKHARHFRGRKNRCYRLAVRTVIRAFVKCTKARYLKKKNMRTLWINRITAASQEHGLKYPALI 80 (118)
T ss_pred CCCC-CCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf 4235-561579999999998164676765327999999999999999879988899999999999999987699899999
Q ss_pred HHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHH
Q ss_conf 999962986468999999741989999999999998
Q gi|254780318|r 81 NGLHKAGIVLDRKVLSDLAITQLDSFKKIVELSRSR 116 (123)
Q Consensus 81 ~~L~~~~i~LnRKvLa~LAi~dp~~F~~lv~~ak~~ 116 (123)
+||+++||.|||||||||||+||.+|++||+++|+.
T Consensus 81 ~~Lk~~~I~LnRKvLs~LAi~dp~~F~~lv~~ak~~ 116 (118)
T 2ftc_L 81 GNLVKCQVELNRKVLADLAIYEPKTFKSLAALASRR 116 (118)
T ss_pred HHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf 798996886649999999942999999999999861
No 2
>>2ghj_A 50S ribosomal protein L20; folding intermediate, ribosomal protein extension, structural protein; 2.90A {Aquifex aeolicus} PDB: 1gyz_A (A:)
Probab=100.00 E-value=0 Score=314.00 Aligned_cols=117 Identities=55% Similarity=0.890 Sum_probs=114.6
Q ss_pred CCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf 77566555689989999741315645236999999999999998746998899999999986779999718999999999
Q gi|254780318|r 3 RVKRGVVSSAKHKKVLKSAKGFYGRRKNTIRAAKAAVDRSQQYAYRDRRVKKRDFRSLWIQRINAAVRVYDLNYSQFING 82 (123)
Q Consensus 3 Rvk~g~~~~~rrkkilk~akGfrG~r~~~~r~A~~~v~kAl~yayrdRk~kKr~fR~LWI~RINAa~r~~g~sYS~fi~~ 82 (123)
|| +|+++++||++||++|+||+|++++||++|+|+|+|||+|+|+||+.+||+||+|||+|||||+|++|++||.||+|
T Consensus 2 R~-rg~~ar~rrkkilk~akGf~G~~~~~~r~A~q~v~kAl~yay~~Rk~kKr~~R~LWI~RINAa~R~~g~sYs~fi~~ 80 (118)
T 2ghj_A 2 RV-KGPSSRRKKKKILKLAKGYRGQRSRSYRRAKEAVXRALYYQYRDRKLRKREFRRLWIARINAAVRAYGLNYSTFING 80 (118)
T ss_dssp -----------------CCSSSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHH
T ss_pred CC-CCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 87-62788999999999806467776641799999999999999977988999999999999999999859989999999
Q ss_pred HHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99629864689999997419899999999999985565
Q gi|254780318|r 83 LHKAGIVLDRKVLSDLAITQLDSFKKIVELSRSRLLVD 120 (123)
Q Consensus 83 L~~~~i~LnRKvLa~LAi~dp~~F~~lv~~ak~~l~~~ 120 (123)
|++++|.|||||||||||+||.+|++||+++|++|+++
T Consensus 81 L~~~~i~LNRKvLa~LAi~dp~sF~~lv~~~k~~l~~~ 118 (118)
T 2ghj_A 81 LKKAGIELDRKILADXAVRDPQAFEQVVNKVKEALQVQ 118 (118)
T ss_dssp HTTTTCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHSCC
T ss_pred HHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHCCC
T ss_conf 99968867489999999619999999999999974579
No 3
>>2j01_U 50S ribosomal protein L20; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus} (U:47-118)
Probab=99.97 E-value=3.4e-32 Score=208.71 Aligned_cols=72 Identities=53% Similarity=0.827 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHH
Q ss_conf 746998899999999986779999718999999999996298646899999974198999999999999855
Q gi|254780318|r 47 YRDRRVKKRDFRSLWIQRINAAVRVYDLNYSQFINGLHKAGIVLDRKVLSDLAITQLDSFKKIVELSRSRLL 118 (123)
Q Consensus 47 yrdRk~kKr~fR~LWI~RINAa~r~~g~sYS~fi~~L~~~~i~LnRKvLa~LAi~dp~~F~~lv~~ak~~l~ 118 (123)
|+||+.|||+||+|||+|||||+|++|++||+||++|++++|.|||||||||||+||.+|++||+++|++|.
T Consensus 1 yrdRk~kKr~fR~LWI~RINAa~R~~g~~Ys~fi~~L~~~~I~LNRK~La~LAi~dp~sF~~lv~~~k~~~~ 72 (72)
T 2j01_U 1 YAHRKRRKRDFRRLWIVRINAACRQHGLNYSTFIHGLKKAGIEVDRKNLADLAVREPQVFAELVERAKAAQG 72 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHHTTCCSCSCTTTTTTTTSSHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHCC
T ss_conf 972999999999999999999998459889999989999588574899999996199999999999987568
No 4
>>3bbo_S Ribosomal protein L20; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} (S:1-74)
Probab=99.97 E-value=1.8e-31 Score=204.44 Aligned_cols=74 Identities=43% Similarity=0.593 Sum_probs=73.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 98775665556899899997413156452369999999999999987469988999999999867799997189
Q gi|254780318|r 1 MTRVKRGVVSSAKHKKVLKSAKGFYGRRKNTIRAAKAAVDRSQQYAYRDRRVKKRDFRSLWIQRINAAVRVYDL 74 (123)
Q Consensus 1 M~Rvk~g~~~~~rrkkilk~akGfrG~r~~~~r~A~~~v~kAl~yayrdRk~kKr~fR~LWI~RINAa~r~~g~ 74 (123)
|||||+|++++++|++||++|+||+|++++||++|+|+|+|||+|||+||+++|++||+|||+|||||+||+||
T Consensus 1 M~Rvk~g~~~~~rrkkilk~AkGf~G~~~~~~r~A~~~v~kAl~yay~~Rk~kKr~~R~LWI~RINAa~r~~gl 74 (74)
T 3bbo_S 1 MTRVKRGYIARRRRKKIRFFASSFRGAHSRLTRTIAQQKIRALVSAHRDRDRQKRDFRRLWITRINAAIRERGV 74 (74)
T ss_dssp CCCSCCTTHHHHHHHHHHHHCSSCSSSTTSSHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 99856628889999999998432566642299999999999999999879888989999999999999998398
No 5
>>3i1n_Q 50S ribosomal protein L20; ribosome structure, protein-RNA complex, acetylation, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA- binding, methylation; 3.19A {Escherichia coli k-12} PDB: 1vs8_Q 3e1b_J 3e1d_J 1vs6_Q 3i1p_Q 3i1r_Q 3i1t_Q 3i20_Q 3i22_Q 2qam_Q* 1p85_O 1p86_O 2awb_Q 2aw4_Q 2i2v_Q 2j28_Q 2i2t_Q* 2qao_Q* 2qba_Q* 2qbc_Q* ... (Q:50-118)
Probab=99.96 E-value=1.8e-30 Score=198.60 Aligned_cols=69 Identities=49% Similarity=0.840 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHH
Q ss_conf 998899999999986779999718999999999996298646899999974198999999999999855
Q gi|254780318|r 50 RRVKKRDFRSLWIQRINAAVRVYDLNYSQFINGLHKAGIVLDRKVLSDLAITQLDSFKKIVELSRSRLL 118 (123)
Q Consensus 50 Rk~kKr~fR~LWI~RINAa~r~~g~sYS~fi~~L~~~~i~LnRKvLa~LAi~dp~~F~~lv~~ak~~l~ 118 (123)
|+.||||||+|||+|||||+|+||++||.||++|++++|.|||||||||||+||.+|++||+++|++|+
T Consensus 1 Rk~kKr~fR~LWI~RINAa~R~~g~~Ys~fi~~L~~~~I~LNRK~Ls~LAi~dp~sF~~lv~~~k~~~~ 69 (69)
T 3i1n_Q 1 RRQRKRQFRQLWIARINAAARQNGISYSKFINGLKKASVEIDRKILADIAVFDKVAFTALVEKAKAALA 69 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHSSSCCCCTTTTTHHHHCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHCC
T ss_conf 998999999999999999998559989999999999588764999999995299999999999998639
No 6
>>2zjr_N 50S ribosomal protein L20; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} (N:52-118)
Probab=99.96 E-value=1.9e-29 Score=192.66 Aligned_cols=67 Identities=55% Similarity=0.869 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHH
Q ss_conf 8899999999986779999718999999999996298646899999974198999999999999855
Q gi|254780318|r 52 VKKRDFRSLWIQRINAAVRVYDLNYSQFINGLHKAGIVLDRKVLSDLAITQLDSFKKIVELSRSRLL 118 (123)
Q Consensus 52 ~kKr~fR~LWI~RINAa~r~~g~sYS~fi~~L~~~~i~LnRKvLa~LAi~dp~~F~~lv~~ak~~l~ 118 (123)
+|||+||+|||+|||||+|++|++||+||++|++++|.|||||||||||+||.+|++||+++|++++
T Consensus 1 ~kKR~fR~LWItRINAa~r~~g~~Ys~fi~~L~~~~I~LNRKiLs~LAi~dp~sF~~lv~~~k~~~~ 67 (67)
T 2zjr_N 1 NKKRDFRRLWIQRINAGARLHGMNYSTFINGLKRANIDLNRKVLADIAAREPEAFKALVDASRNARQ 67 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHHHCTTCCCCSSHHHHHHHCHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHCC
T ss_conf 8999999999999999999849989999989999588664999999995289999999999998729
No 7
>>2zjr_N 50S ribosomal protein L20; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} (N:1-51)
Probab=99.74 E-value=1.8e-18 Score=128.35 Aligned_cols=51 Identities=49% Similarity=0.795 Sum_probs=50.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 987756655568998999974131564523699999999999999874699
Q gi|254780318|r 1 MTRVKRGVVSSAKHKKVLKSAKGFYGRRKNTIRAAKAAVDRSQQYAYRDRR 51 (123)
Q Consensus 1 M~Rvk~g~~~~~rrkkilk~akGfrG~r~~~~r~A~~~v~kAl~yayrdRk 51 (123)
|||||+|+++++|||+||++||||+|++|+||+.|+|+|++||+|||+|||
T Consensus 1 M~Rvk~g~~~r~RrkKilk~AkG~~G~rs~~~r~A~q~v~kal~yayrdRk 51 (51)
T 2zjr_N 1 MPRAKTGIVRRRRHKKVLKRAKGFWGSRSKQYRNAFQTLLNAATYEYRDRR 51 (51)
T ss_dssp -CCCCCTTHHHHHHHHHHTTCSSCCGGGGTCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 998666289999999999981656877644289999999999999996698
No 8
>>3er7_A Uncharacterized NTF2-like protein; YP_001812677.1, NTF2-like protein of unknown function, structural genomics; HET: MSE; 1.50A {Exiguobacterium sibiricum 255-15} (A:)
Probab=52.92 E-value=8.2 Score=19.20 Aligned_cols=23 Identities=35% Similarity=0.466 Sum_probs=18.7
Q ss_pred CCHH-HHHHHHHCCHHHHHHHHHH
Q ss_conf 4689-9999974198999999999
Q gi|254780318|r 90 LDRK-VLSDLAITQLDSFKKIVEL 112 (123)
Q Consensus 90 LnRK-vLa~LAi~dp~~F~~lv~~ 112 (123)
|||= -|||+|..||+.|..|+.+
T Consensus 8 LdrYF~LsD~A~~d~~~l~eLi~L 31 (131)
T 3er7_A 8 LDRYFDLFDASRTDEKAFDDLISL 31 (131)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 999999998745885659999987
No 9
>>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme A kinase, structural genomics, joint center for structural genomics, JCSG; HET: ADP COD; 2.60A {Thermotoga maritima} (A:44-109)
Probab=52.63 E-value=17 Score=17.28 Aligned_cols=33 Identities=18% Similarity=0.213 Sum_probs=26.6
Q ss_pred CCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHH
Q ss_conf 298646899999974198999999999999855
Q gi|254780318|r 86 AGIVLDRKVLSDLAITQLDSFKKIVELSRSRLL 118 (123)
Q Consensus 86 ~~i~LnRKvLa~LAi~dp~~F~~lv~~ak~~l~ 118 (123)
.+=.|||+.|+++.-.||.....|-++.--..-
T Consensus 25 ~dg~idR~~L~~~vF~d~~~~~~Le~iiHP~I~ 57 (66)
T 2grj_A 25 EDGKVNRKKLAGIVFESRENLKKLELLVHPLXK 57 (66)
T ss_dssp SSSSBCHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 466221889999885248888898742178899
No 10
>>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} (A:)
Probab=50.12 E-value=18 Score=17.14 Aligned_cols=28 Identities=7% Similarity=0.201 Sum_probs=24.7
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHCCCCCC
Q ss_conf 6779999718999999999996298646
Q gi|254780318|r 64 RINAAVRVYDLNYSQFINGLHKAGIVLD 91 (123)
Q Consensus 64 RINAa~r~~g~sYS~fi~~L~~~~i~Ln 91 (123)
.+..+++..|++++.|-.-|++-+|...
T Consensus 34 n~~~aA~~Lgisr~tL~~klkk~gi~~~ 61 (63)
T 3e7l_A 34 DLKRTAEEIGIDLSNLYRKIKSLNIRVK 61 (63)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHTTCCCC
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHCCCCC
T ss_conf 8999999989599999999999489957
No 11
>>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} (A:39-105)
Probab=46.51 E-value=22 Score=16.71 Aligned_cols=33 Identities=21% Similarity=0.369 Sum_probs=26.9
Q ss_pred CCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHH
Q ss_conf 298646899999974198999999999999855
Q gi|254780318|r 86 AGIVLDRKVLSDLAITQLDSFKKIVELSRSRLL 118 (123)
Q Consensus 86 ~~i~LnRKvLa~LAi~dp~~F~~lv~~ak~~l~ 118 (123)
-+=.|||+.|+++.-+||...+.|-+++--..-
T Consensus 24 ~dg~inR~~L~~~vF~d~~~~~~Le~iiHP~I~ 56 (67)
T 1uf9_A 24 VGGRLDRRALARLVFSDPERLKALEAVVHPEVR 56 (67)
T ss_dssp ETTEECHHHHHHHHTTSHHHHHHHHHHHHHHHH
T ss_pred ECCCCCHHHHHHHHCCCCHHHCCCCCCHHHHHH
T ss_conf 058521035666650472010002233147889
No 12
>>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), structural genomics; HET: ACO UNL; 1.70A {Mus musculus} (A:106-180)
Probab=45.76 E-value=22 Score=16.64 Aligned_cols=45 Identities=13% Similarity=0.255 Sum_probs=32.1
Q ss_pred CCCHHHHHHHHH----HCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHH
Q ss_conf 899999999999----629864689999997419899999999999985
Q gi|254780318|r 73 DLNYSQFINGLH----KAGIVLDRKVLSDLAITQLDSFKKIVELSRSRL 117 (123)
Q Consensus 73 g~sYS~fi~~L~----~~~i~LnRKvLa~LAi~dp~~F~~lv~~ak~~l 117 (123)
+.-|..++.-.. ..+=.|||+.|+++.-.||.....|-+++--..
T Consensus 12 ~~~~~~i~~~FG~~il~~dg~ldR~~L~~~vF~d~~~~~~Le~iiHP~V 60 (75)
T 2f6r_A 12 GPAYQPVVEAFGTDILHKDGTINRKVLGSRVFGNKKQMKILTDIVWPVI 60 (75)
T ss_dssp STTHHHHHHHHCGGGBCTTSSBCHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHH
T ss_conf 7899999998385446888752688876553114788876401017899
No 13
>>1eto_A FIS, factor for inversion stimulation; transcriptional activation region, DNA-binding protein, transcription activator; 1.90A {Escherichia coli} (A:46-98)
Probab=45.42 E-value=23 Score=16.61 Aligned_cols=26 Identities=19% Similarity=0.221 Sum_probs=22.9
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHCCCC
Q ss_conf 67799997189999999999962986
Q gi|254780318|r 64 RINAAVRVYDLNYSQFINGLHKAGIV 89 (123)
Q Consensus 64 RINAa~r~~g~sYS~fi~~L~~~~i~ 89 (123)
.+..|++..|++.+.|-.-|++.+|+
T Consensus 28 n~s~aA~~Lgisr~tL~rklkk~~i~ 53 (53)
T 1eto_A 28 NQTRAALMMGINRGTLRKKLKKYGMN 53 (53)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHHTTCC
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHCCC
T ss_conf 89999999798999999999985859
No 14
>>2cob_A LCOR protein; MLR2, KIAA1795, helix-turn-helix, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:)
Probab=44.60 E-value=23 Score=16.54 Aligned_cols=27 Identities=15% Similarity=0.149 Sum_probs=22.1
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHCCCCC
Q ss_conf 677999971899999999999629864
Q gi|254780318|r 64 RINAAVRVYDLNYSQFINGLHKAGIVL 90 (123)
Q Consensus 64 RINAa~r~~g~sYS~fi~~L~~~~i~L 90 (123)
-|..|++.+|++||.+..-|+......
T Consensus 32 S~~~As~~y~IP~sTL~~ri~g~~~~~ 58 (70)
T 2cob_A 32 SVSKAQSIYGIPHSTLEYKVKERLGTL 58 (70)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHTTTT
T ss_pred EEHHCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 222037530576501112277655444
No 15
>>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} (A:45-80)
Probab=41.51 E-value=16 Score=17.47 Aligned_cols=22 Identities=18% Similarity=0.222 Sum_probs=17.9
Q ss_pred HHHHCCCCCCHHHHHHHHHCCH
Q ss_conf 9996298646899999974198
Q gi|254780318|r 82 GLHKAGIVLDRKVLSDLAITQL 103 (123)
Q Consensus 82 ~L~~~~i~LnRKvLa~LAi~dp 103 (123)
..-..+=.|||+.|.++.-.||
T Consensus 15 ~il~~dG~LnR~~L~~~VF~dP 36 (36)
T 1vht_A 15 NMIAADGTLQRRALRERIFANP 36 (36)
T ss_dssp GGBCTTSCBCHHHHHHHHHTCH
T ss_pred CCCCCCCCHHHHHHHHHHHHHH
T ss_conf 0134661022335667764019
No 16
>>2ee7_A Sperm flagellar protein 1; all alpha protein, CH domain, structural genomics, NPPSFA; NMR {Homo sapiens} (A:48-127)
Probab=40.25 E-value=22 Score=16.65 Aligned_cols=46 Identities=15% Similarity=0.190 Sum_probs=39.2
Q ss_pred CHHHH-HHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99999-99999629864689999997419899999999999985565
Q gi|254780318|r 75 NYSQF-INGLHKAGIVLDRKVLSDLAITQLDSFKKIVELSRSRLLVD 120 (123)
Q Consensus 75 sYS~f-i~~L~~~~i~LnRKvLa~LAi~dp~~F~~lv~~ak~~l~~~ 120 (123)
+++.| .--|++.++.|++..+-+||-..|.+-..+.......++..
T Consensus 28 NW~~ln~kvl~Kl~~~l~~~~ie~l~~~~~gaie~lL~~l~~~~~~~ 74 (80)
T 2ee7_A 28 NWGHLNRKVLKRLNFSVPDDVMRKIAQCAPGVVELVLIPLRQRLEER 74 (80)
T ss_dssp HHHHHHHHTTGGGTCCCCHHHHHHHHTTCTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf 99999999999858999999999998189668999999999999999
No 17
>>1g2h_A Transcriptional regulatory protein TYRR homolog; protein structure, , DNA-binding domain, helix- turn-helix motif; NMR {Haemophilus influenzae} (A:)
Probab=35.65 E-value=32 Score=15.70 Aligned_cols=26 Identities=15% Similarity=0.175 Sum_probs=22.9
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHCCCC
Q ss_conf 67799997189999999999962986
Q gi|254780318|r 64 RINAAVRVYDLNYSQFINGLHKAGIV 89 (123)
Q Consensus 64 RINAa~r~~g~sYS~fi~~L~~~~i~ 89 (123)
.+..+++..|++.+.|-.-|++-+|.
T Consensus 35 n~~~aA~~Lgisr~tL~rklkk~gi~ 60 (61)
T 1g2h_A 35 STRKLAQRLGVSHTAIANKLKQYGIG 60 (61)
T ss_dssp SHHHHHHHTTSCTHHHHHHHHTTTCC
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHCCC
T ss_conf 38999999586189999899984658
No 18
>>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 3.00A {Aquifex aeolicus VF5} (A:31-102)
Probab=34.13 E-value=30 Score=15.89 Aligned_cols=42 Identities=19% Similarity=0.385 Sum_probs=29.8
Q ss_pred CHHHHHHHH----HHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHH
Q ss_conf 999999999----962986468999999741989999999999998
Q gi|254780318|r 75 NYSQFINGL----HKAGIVLDRKVLSDLAITQLDSFKKIVELSRSR 116 (123)
Q Consensus 75 sYS~fi~~L----~~~~i~LnRKvLa~LAi~dp~~F~~lv~~ak~~ 116 (123)
-|..+..-+ -..+=.|||+.|+++.-+||...+.|-++.--.
T Consensus 15 ~~~~l~~~fG~~i~~~~G~idR~~L~~~vF~d~~~~~~Le~iiHP~ 60 (72)
T 2if2_A 15 VYEEVVKTFGKGILDEEGNIDRKKLADIVFKDEEKLRKLEEITHRA 60 (72)
T ss_dssp HHHHHHHHHCTTTTEETTEECHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 8999999828400267861357899999841430356764221788
No 19
>>2p9x_A Hypothetical protein PH0832; NPPSFA, national project on protein structural and functional analyses; 1.65A {Pyrococcus horikoshii OT3} (A:)
Probab=27.57 E-value=33 Score=15.64 Aligned_cols=47 Identities=21% Similarity=0.271 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHH----HHCCCCCCHHHHHHHHHCCHHHHHHHHHHH
Q ss_conf 9999867799997189999999999----962986468999999741989999999999
Q gi|254780318|r 59 SLWIQRINAAVRVYDLNYSQFINGL----HKAGIVLDRKVLSDLAITQLDSFKKIVELS 113 (123)
Q Consensus 59 ~LWI~RINAa~r~~g~sYS~fi~~L----~~~~i~LnRKvLa~LAi~dp~~F~~lv~~a 113 (123)
.+-+.-+--+.|+.|-..-..+..- ..++| +||..||.-|+..|+..
T Consensus 6 ~i~~~t~~~alr~~~p~le~~LeahL~~~~n~g~--------ElayeDP~kFkeaV~~L 56 (99)
T 2p9x_A 6 DILTKTIILALREVAPGLEAVLEAHLRATLNSGI--------ELAYDDPQKFKEAVSKL 56 (99)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHSCCT--------THHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCE--------EEHHCCHHHHHHHHHHH
T ss_conf 9999999999998582259999999986516661--------00305989999999999
No 20
>>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} (A:1-88)
Probab=25.98 E-value=48 Score=14.72 Aligned_cols=61 Identities=11% Similarity=0.007 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHH--HHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHH
Q ss_conf 99999999867799997189999999--99996298646899999974198999999999999
Q gi|254780318|r 55 RDFRSLWIQRINAAVRVYDLNYSQFI--NGLHKAGIVLDRKVLSDLAITQLDSFKKIVELSRS 115 (123)
Q Consensus 55 r~fR~LWI~RINAa~r~~g~sYS~fi--~~L~~~~i~LnRKvLa~LAi~dp~~F~~lv~~ak~ 115 (123)
+..-..|...++....++|++++.|. ..|..++=.+.-+-|++.--.+|.+...+++.-.+
T Consensus 5 ~~~~~~~~~~~~~~l~~~gls~~q~~vL~~l~~~~g~~t~~~La~~~~~~~~~vs~~i~~Le~ 67 (88)
T 1ku9_A 5 EEAKKLIIELFSELAKIHGLNKSVGAVYAILYLSDKPLTISDIXEELKISKGNVSXSLKKLEE 67 (88)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHCSSCEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 999999999999999981979999999999997698969999997848665149999999998
No 21
>>2a6h_C DNA-directed RNA polymerase beta chain; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} (C:1078-1119)
Probab=25.04 E-value=38 Score=15.31 Aligned_cols=14 Identities=21% Similarity=0.339 Sum_probs=11.4
Q ss_pred CHHHHHHHHHHHHH
Q ss_conf 98999999999999
Q gi|254780318|r 102 QLDSFKKIVELSRS 115 (123)
Q Consensus 102 dp~~F~~lv~~ak~ 115 (123)
=|+||+.|++..++
T Consensus 4 iPESFkVL~kElqs 17 (42)
T 2a6h_C 4 VPESFRVLVKELQA 17 (42)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
T ss_conf 98579999999986
No 22
>>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} (A:1-54)
Probab=20.00 E-value=44 Score=14.90 Aligned_cols=25 Identities=20% Similarity=0.189 Sum_probs=18.9
Q ss_pred CCCHHHHHHHHHCCHHHHHHHHHHH
Q ss_conf 6468999999741989999999999
Q gi|254780318|r 89 VLDRKVLSDLAITQLDSFKKIVELS 113 (123)
Q Consensus 89 ~LnRKvLa~LAi~dp~~F~~lv~~a 113 (123)
.+|+++|..|.-+-+.++..|.+..
T Consensus 4 ~~D~~Il~~L~~n~r~s~~~la~~l 28 (54)
T 1i1g_A 4 ERDKIILEILEKDARTPFTEIAKKL 28 (54)
T ss_dssp SHHHHHHHHHHHCTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHH
T ss_conf 8999999999985898999999998
Done!