HHsearch results for GI: 254780318 and protein with PDBid: 2j01_U
>2j01_U 50S ribosomal protein L20; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus} SCOP: a.144.2.1 PDB: 1vsp_O 2hgj_T 2hgq_T 2hgu_T 1vsa_O 2j03_U 2jl6_U 2jl8_U 2v47_U 2v49_U 2wdi_U 2wdj_U 2wdl_U 2wdn_U 2wh2_U 2wh4_U 2wrj_U 2wrl_U 2wro_U 2wrr_U ...
Probab=100.00 E-value=0 Score=333.68 Aligned_cols=117 Identities=50% Similarity=0.806 Sum_probs=116.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
Q ss_conf 98775665556899899997413156452369999999999999987469988999999999867799997189999999
Q gi|254780318|r 1 MTRVKRGVVSSAKHKKVLKSAKGFYGRRKNTIRAAKAAVDRSQQYAYRDRRVKKRDFRSLWIQRINAAVRVYDLNYSQFI 80 (123)
Q Consensus 1 M~Rvk~g~~~~~rrkkilk~akGfrG~r~~~~r~A~~~v~kAl~yayrdRk~kKr~fR~LWI~RINAa~r~~g~sYS~fi 80 (123)
|||||+|+++++|||+||++|+||+|++++||++|+|+|+|||+|||+||+.+||+||+|||+|||||+|++|++||+||
T Consensus 1 M~Rvkrg~~~~~rrkkilk~akGfrG~~s~~~r~A~~~v~kAl~yayrdRk~kKr~fR~LWI~RINAa~r~~g~sYs~fi 80 (118)
T 2j01_U 1 MPRAKTGVVRRRKHKKILKLAKGYWGLRSKSFRKARETLFAAGNYAYAHRKRRKRDFRRLWIVRINAACRQHGLNYSTFI 80 (118)
T ss_dssp -CCCCCCSHHHHHHHHHHHHTTTCSSGGGTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf 99876728899999999998352576652389999999999999999839999999999999999999984499889999
Q ss_pred HHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHH
Q ss_conf 9999629864689999997419899999999999985
Q gi|254780318|r 81 NGLHKAGIVLDRKVLSDLAITQLDSFKKIVELSRSRL 117 (123)
Q Consensus 81 ~~L~~~~i~LnRKvLa~LAi~dp~~F~~lv~~ak~~l 117 (123)
++|++++|+|||||||||||+||.+|++||+++|+++
T Consensus 81 ~~L~k~~i~LnRKvLs~lAi~dp~~F~~lv~~~k~~~ 117 (118)
T 2j01_U 81 HGLKKAGIEVDRKNLADLAVREPQVFAELVERAKAAQ 117 (118)
T ss_dssp HHHHTTCCSCSCTTTTTTTTSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHC
T ss_conf 9999938977489999999608999999999998746