HHSEARCH alignment of GI: 254780318 and SCOP domain: d2gyco1

Alignment
>d2gyco1 a.144.2.1 (O:2-116) Ribosomal protein L20 {Escherichia coli [TaxId: 562]}
Probab=100.00  E-value=0  Score=321.77  Aligned_cols=115  Identities=54%  Similarity=0.890  Sum_probs=113.5

Q ss_pred             CCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf             77566555689989999741315645236999999999999998746998899999999986779999718999999999
Q gi|254780318|r    3 RVKRGVVSSAKHKKVLKSAKGFYGRRKNTIRAAKAAVDRSQQYAYRDRRVKKRDFRSLWIQRINAAVRVYDLNYSQFING   82 (123)
Q Consensus         3 Rvk~g~~~~~rrkkilk~akGfrG~r~~~~r~A~~~v~kAl~yayrdRk~kKr~fR~LWI~RINAa~r~~g~sYS~fi~~   82 (123)
                      |||+|+++++||++||++|+||+|++++||++|+|+|+||++|||+||+.|||+||+|||+|||||+||+|++||+||+|
T Consensus         1 Rvk~g~~~~~rrkkilk~akGf~G~~~~~~r~A~~~v~kA~~ya~rdRk~kKr~fR~LWI~RINAA~r~~gl~Ys~fi~~   80 (115)
T d2gyco1           1 RVKRGVIARARHKKILKQAKGYYGARSRVYRVAFQAVIKAGQYAYRDRRQRKRQFRQLWIARINAAARQNGISYSKFING   80 (115)
T ss_dssp             CCCCCSSSSSSSSSSSSSCTTCCSSSSSCSTTSSSSSSSTTSSSTTCCTTSTTTGGGSSSSSHHHHSSSSSCCGGGTSTT
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf             98773789999999999805257676535899999999999999985999999999999999999998359989999999


Q ss_pred             HHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHH
Q ss_conf             99629864689999997419899999999999985
Q gi|254780318|r   83 LHKAGIVLDRKVLSDLAITQLDSFKKIVELSRSRL  117 (123)
Q Consensus        83 L~~~~i~LnRKvLa~LAi~dp~~F~~lv~~ak~~l  117 (123)
                      |+++||+|||||||||||+||.+|++||+++|++|
T Consensus        81 L~k~~I~LnRKvLs~lAi~dp~~F~~lv~~aK~~l  115 (115)
T d2gyco1          81 LKKASVEIDRKILADIAVFDKVAFTALVEKAKAAL  115 (115)
T ss_dssp             TTTSSSCCCSSSTTSSSSSCSSSSSTTTTTTTSCC
T ss_pred             HHHHCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHC
T ss_conf             99958967399999999609999999999998519


SCOP domain information

class: All alpha proteins
fold: PABP domain-like
superfamily: Ribosomal protein L20
family: Ribosomal protein L20
domain: Ribosomal protein L20
species: Escherichia coli [TaxId: 562]