HHSEARCH alignment of GI: 254780318 and SCOP domain: d2zjrn1

Alignment
>d2zjrn1 a.144.2.1 (N:2-118) Ribosomal protein L20 {Deinococcus radiodurans [TaxId: 1299]}
Probab=100.00  E-value=0  Score=331.81  Aligned_cols=117  Identities=52%  Similarity=0.832  Sum_probs=115.7

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf             87756655568998999974131564523699999999999999874699889999999998677999971899999999
Q gi|254780318|r    2 TRVKRGVVSSAKHKKVLKSAKGFYGRRKNTIRAAKAAVDRSQQYAYRDRRVKKRDFRSLWIQRINAAVRVYDLNYSQFIN   81 (123)
Q Consensus         2 ~Rvk~g~~~~~rrkkilk~akGfrG~r~~~~r~A~~~v~kAl~yayrdRk~kKr~fR~LWI~RINAa~r~~g~sYS~fi~   81 (123)
                      ||||+|+++++||++||++||||+|++|+||++|+|+|+|||+|||+||+.+||+||+|||+|||||+|++|++||+||+
T Consensus         1 pRvk~g~~~~~rrkkilk~akGfrG~~s~~~r~A~~~v~kAl~yayrdRk~kKr~fR~LWI~RINAa~r~~gl~YS~fi~   80 (117)
T d2zjrn1           1 PRAKTGIVRRRRHKKVLKRAKGFWGSRSKQYRNAFQTLLNAATYEYRDRRNKKRDFRRLWIQRINAGARLHGMNYSTFIN   80 (117)
T ss_dssp             CCCCCTTHHHHHHHHHHTTCSSCCGGGGTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf             99866289999999999981646777655289999999999999996798889899999999999999990999999999


Q ss_pred             HHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHH
Q ss_conf             9996298646899999974198999999999999855
Q gi|254780318|r   82 GLHKAGIVLDRKVLSDLAITQLDSFKKIVELSRSRLL  118 (123)
Q Consensus        82 ~L~~~~i~LnRKvLa~LAi~dp~~F~~lv~~ak~~l~  118 (123)
                      ||+++||+|||||||||||+||++|++||+++|++|+
T Consensus        81 ~L~~~~I~LnRK~Ls~lAi~dp~~F~~lv~~aK~a~~  117 (117)
T d2zjrn1          81 GLKRANIDLNRKVLADIAAREPEAFKALVDASRNARQ  117 (117)
T ss_dssp             HHHHCTTCCCCSSHHHHHHHCHHHHHHHHHHHHTTTC
T ss_pred             HHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHCC
T ss_conf             9999589773999999996099999999999998639


SCOP domain information

class: All alpha proteins
fold: PABP domain-like
superfamily: Ribosomal protein L20
family: Ribosomal protein L20
domain: Ribosomal protein L20
species: Deinococcus radiodurans [TaxId: 1299]