RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780318|ref|YP_003064731.1| ribosomal protein L20
[Candidatus Liberibacter asiaticus str. psy62]
(123 letters)
>gnl|CDD|144155 pfam00453, Ribosomal_L20, Ribosomal protein L20.
Length = 107
Score = 156 bits (397), Expect = 2e-39
Identities = 64/107 (59%), Positives = 78/107 (72%)
Query: 3 RVKRGVVSSAKHKKVLKSAKGFYGRRKNTIRAAKAAVDRSQQYAYRDRRVKKRDFRSLWI 62
RVKRGVV+ + KK+LK AKGF G R R AK V ++ QYAYRDR+ KKRDFR LWI
Sbjct: 1 RVKRGVVARKRRKKILKLAKGFRGARSKLFRTAKQQVMKALQYAYRDRKKKKRDFRRLWI 60
Query: 63 QRINAAVRVYDLNYSQFINGLHKAGIVLDRKVLSDLAITQLDSFKKI 109
RINAA R + L+YS+FINGL KA I L+RKVL+ LAI ++FK +
Sbjct: 61 TRINAAAREHGLSYSRFINGLKKANIELNRKVLAQLAINDPEAFKAL 107
>gnl|CDD|30640 COG0292, RplT, Ribosomal protein L20 [Translation, ribosomal
structure and biogenesis].
Length = 118
Score = 145 bits (368), Expect = 3e-36
Identities = 70/117 (59%), Positives = 86/117 (73%)
Query: 1 MTRVKRGVVSSAKHKKVLKSAKGFYGRRKNTIRAAKAAVDRSQQYAYRDRRVKKRDFRSL 60
M RVKRGVV+ A+ KK+LK AKG+ G R R AK AV ++ QYAYRDRR +KRDFR L
Sbjct: 1 MARVKRGVVARARRKKILKLAKGYRGARSRLYRVAKQAVMKALQYAYRDRRQRKRDFRKL 60
Query: 61 WIQRINAAVRVYDLNYSQFINGLHKAGIVLDRKVLSDLAITQLDSFKKIVELSRSRL 117
WI RINAA R L+YS+FINGL KAGI +DRKVL+DLAI +F +VE +++ L
Sbjct: 61 WIARINAAARENGLSYSRFINGLKKAGIEIDRKVLADLAINDPAAFAALVEKAKAAL 117
>gnl|CDD|177008 CHL00068, rpl20, ribosomal protein L20.
Length = 115
Score = 113 bits (286), Expect = 1e-26
Identities = 51/111 (45%), Positives = 71/111 (63%)
Query: 1 MTRVKRGVVSSAKHKKVLKSAKGFYGRRKNTIRAAKAAVDRSQQYAYRDRRVKKRDFRSL 60
MTRVKRG ++ + KK+LK A GF G R A ++ +YRDR+ KKRDFR L
Sbjct: 1 MTRVKRGYIARKRRKKILKFASGFRGAHSRLFRTANQQKMKALVSSYRDRKKKKRDFRRL 60
Query: 61 WIQRINAAVRVYDLNYSQFINGLHKAGIVLDRKVLSDLAITQLDSFKKIVE 111
WI RINAA+R ++YS+FI+ L+K I+L+RK+L+ +AI + F I
Sbjct: 61 WITRINAAIRENGVSYSKFIHNLYKNQILLNRKILAQIAILDPNCFYTISN 111
>gnl|CDD|39905 KOG4707, KOG4707, KOG4707, Mitochondrial/chloroplast ribosomal
protein L20 [Translation, ribosomal structure and
biogenesis].
Length = 147
Score = 98.1 bits (244), Expect = 6e-22
Identities = 49/116 (42%), Positives = 71/116 (61%)
Query: 1 MTRVKRGVVSSAKHKKVLKSAKGFYGRRKNTIRAAKAAVDRSQQYAYRDRRVKKRDFRSL 60
+ RG + +++ K A F GR++ R A V R+ YA +DR +KKRD R+L
Sbjct: 8 LWLRNRGPDRYMRRQELFKFAAHFRGRKRRCYRLAVRTVIRALVYATKDRYLKKRDMRTL 67
Query: 61 WIQRINAAVRVYDLNYSQFINGLHKAGIVLDRKVLSDLAITQLDSFKKIVELSRSR 116
WI+R+NA + + YS F +GLHK+ I+L+RKVLS LAI + SF +V LS+ R
Sbjct: 68 WIERVNAGAAEHGVRYSPFKHGLHKSPILLNRKVLSQLAIVEPRSFCALVVLSKER 123
>gnl|CDD|34372 COG4758, COG4758, Predicted membrane protein [Function unknown].
Length = 235
Score = 27.1 bits (60), Expect = 1.3
Identities = 15/72 (20%), Positives = 21/72 (29%), Gaps = 11/72 (15%)
Query: 24 FYGRRKNTIRAAKAAVDRSQQYAYRDRRVKKRDFRSLWIQRINAAVRVYDLNYSQFINGL 83
R + K + V DFR+ W VY + NG+
Sbjct: 94 IKKREPQLVNLKKEPSE-----------VNNTDFRNQWFGNQRYYYDVYQWDDINIQNGI 142
Query: 84 HKAGIVLDRKVL 95
I L + VL
Sbjct: 143 GDDIIDLTKAVL 154
>gnl|CDD|39080 KOG3877, KOG3877, KOG3877, NADH:ubiquinone oxidoreductase,
NDUFA10/42kDa subunit [Energy production and
conversion].
Length = 393
Score = 25.8 bits (56), Expect = 2.9
Identities = 10/34 (29%), Positives = 18/34 (52%), Gaps = 5/34 (14%)
Query: 70 RVYDLNYSQFINGLHK-----AGIVLDRKVLSDL 98
R+Y+ + Q+++ L G+VL+R SD
Sbjct: 151 RIYNCRFDQYLDALAHILNTGQGVVLERSPHSDF 184
>gnl|CDD|36160 KOG0942, KOG0942, KOG0942, E3 ubiquitin protein ligase
[Posttranslational modification, protein turnover,
chaperones].
Length = 1001
Score = 25.3 bits (55), Expect = 4.1
Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 3/58 (5%)
Query: 7 GVVSSAKHKKVLKSAKGFYGRRKNTIRAAKAAVDRSQQYA--YRDRRVKKRDFRSLWI 62
G S + +L+ A +R+ + K AV + Q + +R R +K FR +
Sbjct: 1 GASSLNERDNLLRRAAEERHKREEERKQEKNAV-KVQSFWRGFRVRHNQKLLFREEFD 57
>gnl|CDD|146277 pfam03552, Cellulose_synt, Cellulose synthase. Cellulose, an
aggregate of unbranched polymers of beta-1,4-linked
glucose residues, is the major component of wood and
thus paper, and is synthesized by plants, most algae,
some bacteria and fungi, and even some animals. The
genes that synthesize cellulose in higher plants differ
greatly from the well-characterized genes found in
Acetobacter and Agrobacterium sp. More correctly
designated as 'cellulose synthase catalytic subunits',
plant cellulose synthase (CesA) proteins are integral
membrane proteins, approximately 1,000 amino acids in
length. There are a number of highly conserved residues,
including several motifs shown to be necessary for
processive glycosyltransferase activity.
Length = 716
Score = 24.7 bits (54), Expect = 7.4
Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 40 DRSQQYAYRDRRVKKRDFRSLWIQRINAAV 69
D+ Q ++RR KR++ + RINA V
Sbjct: 89 DKVQPDFVKERRAMKREYEEFKV-RINALV 117
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.323 0.134 0.366
Gapped
Lambda K H
0.267 0.0671 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 1,335,184
Number of extensions: 62656
Number of successful extensions: 220
Number of sequences better than 10.0: 1
Number of HSP's gapped: 219
Number of HSP's successfully gapped: 20
Length of query: 123
Length of database: 6,263,737
Length adjustment: 82
Effective length of query: 41
Effective length of database: 4,491,799
Effective search space: 184163759
Effective search space used: 184163759
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (23.5 bits)