HHsearch alignment of GI: 254780319 and MMDB domain: 2j01_8_

>2j01_8 (8:) 50S ribosomal protein L35; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus}

Probab=99.94  E-value=2.1e-28  Score=158.71  Aligned_cols=65  Identities=46%  Similarity=0.599  Sum_probs=63.2

Q ss_pred             CCCCCCCCHHHEEEEECCCCEEEECCCCCCCCCCCCCCHHHHHCCCCEEECHHHHHHHHHHHCCCC
Q ss_conf             987323301212257759980970324885254158804654146986837778999999858688
Q gi|254780319|r    1 MPKMKTNSSSKKRFSITATGKVRAQAAGKRHGMIKRSNKFIRNARGTMVLASADAKKVIRNYLPNG   66 (67)
Q Consensus         1 MPKmKT~k~akKRFk~T~sGKvkr~~agk~H~l~~Ks~krkR~lr~~~~v~~~~~~~i~r~llPYg   66 (67)
                      |||||||+||+|||++|++|+|++++||++|+++++|++++|+|+++.+|+++|.++|.+ ||||.
T Consensus         1 MPKmKT~k~a~KRFk~T~sGKikr~~a~k~H~l~~Ks~krkR~Lr~~~~v~~~~~k~ikk-~LPy~   65 (65)
T 2j01_8            1 MPKMKTHKGAKKRVKITASGKVVAMKTGKRHLNWQKSGKEIRQKGRKFVLAKPEAERIKL-LLPYE   65 (65)
T ss_dssp             -CCCCCCHHHHHHCEECSSSCEEECCTTTTTCSSCSCCSTTTSCSCEECCSSHHHHHHTT-TTTC-
T ss_pred             CCCCCCCHHHHHHEEECCCCCEEECCCCCCCCCCCCCHHHHHHCCCCEEECHHHHHHHHH-HCCCC
T ss_conf             997643212353046778987864306787765548888898647983367999999998-28999