RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780319|ref|YP_003064732.1| 50S ribosomal protein L35
[Candidatus Liberibacter asiaticus str. psy62]
         (67 letters)



>d2j0181 d.301.1.1 (8:2-65) Ribosomal protein L35p {Thermus
          thermophilus [TaxId: 274]}
          Length = 64

 Score = 63.1 bits (154), Expect = 6e-12
 Identities = 27/59 (45%), Positives = 36/59 (61%)

Query: 2  PKMKTNSSSKKRFSITATGKVRAQAAGKRHGMIKRSNKFIRNARGTMVLASADAKKVIR 60
          PKMKT+  +KKR  ITA+GKV A   GKRH   ++S K IR      VLA  +A+++  
Sbjct: 1  PKMKTHKGAKKRVKITASGKVVAMKTGKRHLNWQKSGKEIRQKGRKFVLAKPEAERIKL 59


>gi|94984680|ref|YP_604044.1|(2-62:67) 50S ribosomal protein L35
          [Deinococcus geothermalis DSM 11300] 
          gi|145572732|sp|Q1J0V9.1|RL35_DEIGD RecName: Full=50S
          ribosomal protein L35   gi|94554961|gb|ABF44875.1|
          ribosomal protein L35 [Deinococcus geothermalis DSM
          11300]  E=4e-21 s/c=1.69 id=84% cov=98%
          Length = 61

 Score = 62.0 bits (151), Expect = 1e-11
 Identities = 24/59 (40%), Positives = 32/59 (54%)

Query: 2  PKMKTNSSSKKRFSITATGKVRAQAAGKRHGMIKRSNKFIRNARGTMVLASADAKKVIR 60
          PKMKT  S  +R  +TATGKV A  +GKRH    +S   IR      VLA ++  ++  
Sbjct: 1  PKMKTKKSMTRRVKVTATGKVMAFKSGKRHQNTGKSGDEIRGKGKGFVLAKSEWARMKL 59


>d2qam31 d.301.1.1 (3:1-64) Ribosomal protein L35p {Escherichia
          coli [TaxId: 562]}
          Length = 64

 Score = 60.4 bits (147), Expect = 4e-11
 Identities = 19/59 (32%), Positives = 30/59 (50%)

Query: 2  PKMKTNSSSKKRFSITATGKVRAQAAGKRHGMIKRSNKFIRNARGTMVLASADAKKVIR 60
          PK+KT   + KRF  T  G  + + A  RH + K++ K  R+ R   +++  D   VI 
Sbjct: 1  PKIKTVRGAAKRFKKTGKGGFKHKHANLRHILTKKATKRKRHLRPKAMVSKGDLGLVIA 59


>d1hw6a_ c.1.7.1 (A:) 2,5-diketo-D-gluconic acid reductase A
          {Corynebacterium sp. [TaxId: 1720]}
          Length = 262

 Score = 24.2 bits (51), Expect = 2.9
 Identities = 5/22 (22%), Positives = 9/22 (40%)

Query: 46 GTMVLASADAKKVIRNYLPNGI 67
          G   +  AD ++ +   L  G 
Sbjct: 19 GVFKVPPADTQRAVEEALEVGY 40


>d1mi3a_ c.1.7.1 (A:) Xylose reductase {Fungi (Candida tenuis)
          [TaxId: 45596]}
          Length = 319

 Score = 23.8 bits (50), Expect = 4.3
 Identities = 6/22 (27%), Positives = 10/22 (45%)

Query: 46 GTMVLASADAKKVIRNYLPNGI 67
          G   LA+A A + +   +  G 
Sbjct: 19 GCWKLANATAGEQVYQAIKAGY 40


>d1qwka_ c.1.7.1 (A:) Hypothetical protein C07D8.6 {Nematode
          (Caenorhabditis elegans) [TaxId: 6239]}
          Length = 312

 Score = 23.4 bits (49), Expect = 5.4
 Identities = 4/22 (18%), Positives = 9/22 (40%)

Query: 46 GTMVLASADAKKVIRNYLPNGI 67
          GT   + A+    ++  +  G 
Sbjct: 18 GTWQSSPAEVITAVKTAVKAGY 39


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.127    0.342 

Gapped
Lambda     K      H
   0.267   0.0710    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 220,452
Number of extensions: 7311
Number of successful extensions: 22
Number of sequences better than 10.0: 1
Number of HSP's gapped: 22
Number of HSP's successfully gapped: 7
Length of query: 67
Length of database: 2,407,596
Length adjustment: 36
Effective length of query: 31
Effective length of database: 1,913,316
Effective search space: 59312796
Effective search space used: 59312796
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (21.9 bits)