RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254780319|ref|YP_003064732.1| 50S ribosomal protein L35 [Candidatus Liberibacter asiaticus str. psy62] (67 letters) >d2j0181 d.301.1.1 (8:2-65) Ribosomal protein L35p {Thermus thermophilus [TaxId: 274]} Length = 64 Score = 63.1 bits (154), Expect = 6e-12 Identities = 27/59 (45%), Positives = 36/59 (61%) Query: 2 PKMKTNSSSKKRFSITATGKVRAQAAGKRHGMIKRSNKFIRNARGTMVLASADAKKVIR 60 PKMKT+ +KKR ITA+GKV A GKRH ++S K IR VLA +A+++ Sbjct: 1 PKMKTHKGAKKRVKITASGKVVAMKTGKRHLNWQKSGKEIRQKGRKFVLAKPEAERIKL 59 >gi|94984680|ref|YP_604044.1|(2-62:67) 50S ribosomal protein L35 [Deinococcus geothermalis DSM 11300] gi|145572732|sp|Q1J0V9.1|RL35_DEIGD RecName: Full=50S ribosomal protein L35 gi|94554961|gb|ABF44875.1| ribosomal protein L35 [Deinococcus geothermalis DSM 11300] E=4e-21 s/c=1.69 id=84% cov=98% Length = 61 Score = 62.0 bits (151), Expect = 1e-11 Identities = 24/59 (40%), Positives = 32/59 (54%) Query: 2 PKMKTNSSSKKRFSITATGKVRAQAAGKRHGMIKRSNKFIRNARGTMVLASADAKKVIR 60 PKMKT S +R +TATGKV A +GKRH +S IR VLA ++ ++ Sbjct: 1 PKMKTKKSMTRRVKVTATGKVMAFKSGKRHQNTGKSGDEIRGKGKGFVLAKSEWARMKL 59 >d2qam31 d.301.1.1 (3:1-64) Ribosomal protein L35p {Escherichia coli [TaxId: 562]} Length = 64 Score = 60.4 bits (147), Expect = 4e-11 Identities = 19/59 (32%), Positives = 30/59 (50%) Query: 2 PKMKTNSSSKKRFSITATGKVRAQAAGKRHGMIKRSNKFIRNARGTMVLASADAKKVIR 60 PK+KT + KRF T G + + A RH + K++ K R+ R +++ D VI Sbjct: 1 PKIKTVRGAAKRFKKTGKGGFKHKHANLRHILTKKATKRKRHLRPKAMVSKGDLGLVIA 59 >d1hw6a_ c.1.7.1 (A:) 2,5-diketo-D-gluconic acid reductase A {Corynebacterium sp. [TaxId: 1720]} Length = 262 Score = 24.2 bits (51), Expect = 2.9 Identities = 5/22 (22%), Positives = 9/22 (40%) Query: 46 GTMVLASADAKKVIRNYLPNGI 67 G + AD ++ + L G Sbjct: 19 GVFKVPPADTQRAVEEALEVGY 40 >d1mi3a_ c.1.7.1 (A:) Xylose reductase {Fungi (Candida tenuis) [TaxId: 45596]} Length = 319 Score = 23.8 bits (50), Expect = 4.3 Identities = 6/22 (27%), Positives = 10/22 (45%) Query: 46 GTMVLASADAKKVIRNYLPNGI 67 G LA+A A + + + G Sbjct: 19 GCWKLANATAGEQVYQAIKAGY 40 >d1qwka_ c.1.7.1 (A:) Hypothetical protein C07D8.6 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 312 Score = 23.4 bits (49), Expect = 5.4 Identities = 4/22 (18%), Positives = 9/22 (40%) Query: 46 GTMVLASADAKKVIRNYLPNGI 67 GT + A+ ++ + G Sbjct: 18 GTWQSSPAEVITAVKTAVKAGY 39 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.317 0.127 0.342 Gapped Lambda K H 0.267 0.0710 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 220,452 Number of extensions: 7311 Number of successful extensions: 22 Number of sequences better than 10.0: 1 Number of HSP's gapped: 22 Number of HSP's successfully gapped: 7 Length of query: 67 Length of database: 2,407,596 Length adjustment: 36 Effective length of query: 31 Effective length of database: 1,913,316 Effective search space: 59312796 Effective search space used: 59312796 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 47 (21.9 bits)