HHsearch alignment of GI: 254780320 and MMDB domain: 1i96_V_
>1i96_V (V:) Translation initiation factor IF3; 30S ribosome; HET: WO2; 4.20A {Thermus thermophilus}
Probab=99.96 E-value=9.6e-30 Score=197.95 Aligned_cols=86 Identities=38% Similarity=0.713 Sum_probs=84.6
Q ss_pred CCEEEEEEEECCHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEE
Q ss_conf 20026897400867999999999999603791999999709743573568999999999842243203677324876999
Q gi|254780320|r 50 GIKEVKMRPVIDLHDLQVKLKAIDGFLRDGCKVKISVKFRGREIMHQDLGRELLSNIKERFGEISRIDCEPKFEGRQMIM 129 (136)
Q Consensus 50 ~~KEir~~~~I~~hDl~~K~k~~~~FL~~G~kVki~i~frGRe~~~~e~g~~~l~~i~~~l~~~~~~e~~pk~~Gr~~~~ 129 (136)
++|||+|+|+||+|||++|++||++||++||+|+|+|+|||||++|+|.|.++|++|+++|+++|++|++|+++|++|+|
T Consensus 1 ~iKEirl~~~I~~hDl~~K~k~a~~FL~~G~kVkv~i~frGRe~~~~e~g~~~l~~i~~~l~~~~~~e~~p~~~G~~~~~ 80 (89)
T 1i96_V 1 EVKSIKFRVKIDEHDYQTKLGHIKRFLQEGHKVKVTIMFRGREVAHPELGERILNRVTEDLKDLAVVEMKPEMLGRDMNM 80 (89)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHEECCCCCCCCCEEEE
T ss_conf 96159960687702599999999999967996999999738767588999999999999721340753587651877999
Q ss_pred EEEECC
Q ss_conf 992046
Q gi|254780320|r 130 ILSSKC 135 (136)
Q Consensus 130 ~l~Pkk 135 (136)
+|+|++
T Consensus 81 ~l~Pkk 86 (89)
T 1i96_V 81 LLAPVK 86 (89)
T ss_pred EEEECC
T ss_conf 992068