Query gi|254780320|ref|YP_003064733.1| translation initiation factor IF-3 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 136
No_of_seqs 113 out of 1373
Neff 5.6
Searched_HMMs 13730
Date Wed Jun 1 04:26:19 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780320.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1i96v_ d.68.1.1 (V:) Translat 100.0 7.9E-31 5.7E-35 202.1 9.7 86 50-135 1-86 (86)
2 d1tiga_ d.68.1.1 (A:) Translat 100.0 4.5E-31 3.3E-35 203.6 8.4 87 49-135 1-87 (88)
3 d2ifea_ d.68.1.1 (A:) Translat 100.0 1.1E-30 8.2E-35 201.2 7.3 87 49-135 2-89 (91)
4 d1tifa_ d.15.8.1 (A:) Translat 99.7 8.5E-18 6.2E-22 124.4 4.6 44 1-44 33-76 (76)
5 d1hf2a2 c.102.1.1 (A:1-99) Cel 23.8 17 0.0013 15.3 1.8 46 63-115 26-71 (99)
6 d1qwga_ c.1.27.1 (A:) (2r)-pho 22.4 24 0.0017 14.5 2.3 96 1-111 91-198 (251)
7 d1u83a_ c.1.27.1 (A:) (2r)-pho 19.8 27 0.002 14.1 5.3 92 1-109 92-195 (249)
8 d1p3ra_ b.55.1.2 (A:) Disabled 16.3 32 0.0024 13.7 3.6 57 78-134 13-69 (148)
9 d2j9ga1 b.84.2.1 (A:331-446) B 15.0 35 0.0026 13.5 3.7 58 13-78 46-103 (116)
10 d1ulza1 b.84.2.1 (A:329-451) B 13.2 36 0.0026 13.4 1.4 58 13-78 48-105 (123)
No 1
>d1i96v_ d.68.1.1 (V:) Translation initiation factor IF3, C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=99.97 E-value=7.9e-31 Score=202.10 Aligned_cols=86 Identities=38% Similarity=0.713 Sum_probs=84.8
Q ss_pred CCEEEEEEEECCHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEE
Q ss_conf 20026897400867999999999999603791999999709743573568999999999842243203677324876999
Q gi|254780320|r 50 GIKEVKMRPVIDLHDLQVKLKAIDGFLRDGCKVKISVKFRGREIMHQDLGRELLSNIKERFGEISRIDCEPKFEGRQMIM 129 (136)
Q Consensus 50 ~~KEir~~~~I~~hDl~~K~k~~~~FL~~G~kVki~i~frGRe~~~~e~g~~~l~~i~~~l~~~~~~e~~pk~~Gr~~~~ 129 (136)
++|||+|+|+||+|||++|+++|++||++||+|+|+|+|||||++|+|.|.++|++|+++|+++|++|++|+++|++|+|
T Consensus 1 evKEIrl~~~I~~hDl~~K~k~a~~FL~~G~kVKv~v~frGRe~~~~e~g~~~l~~~~~~l~d~~~ve~~pk~~Gr~~~~ 80 (86)
T d1i96v_ 1 EVKSIKFRVKIDEHDYQTKLGHIKRFLQEGHKVKVTIMFRGREVAHPELGERILNRVTEDLKDLAVVEMKPEMLGRDMNM 80 (86)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHEEEECCCCCCCCEEEE
T ss_conf 96149960687711699999999999850780899999836655587889999999999713031870376350888999
Q ss_pred EEEECC
Q ss_conf 992046
Q gi|254780320|r 130 ILSSKC 135 (136)
Q Consensus 130 ~l~Pkk 135 (136)
+|+|+|
T Consensus 81 ~l~P~K 86 (86)
T d1i96v_ 81 LLAPVK 86 (86)
T ss_pred EEEECC
T ss_conf 996089
No 2
>d1tiga_ d.68.1.1 (A:) Translation initiation factor IF3, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}
Probab=99.97 E-value=4.5e-31 Score=203.57 Aligned_cols=87 Identities=36% Similarity=0.754 Sum_probs=85.5
Q ss_pred CCCEEEEEEEECCHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEE
Q ss_conf 22002689740086799999999999960379199999970974357356899999999984224320367732487699
Q gi|254780320|r 49 TGIKEVKMRPVIDLHDLQVKLKAIDGFLRDGCKVKISVKFRGREIMHQDLGRELLSNIKERFGEISRIDCEPKFEGRQMI 128 (136)
Q Consensus 49 ~~~KEir~~~~I~~hDl~~K~k~~~~FL~~G~kVki~i~frGRe~~~~e~g~~~l~~i~~~l~~~~~~e~~pk~~Gr~~~ 128 (136)
+++|||||+|+||+|||++|+++|++||++||+|+++|+|||||++|+|.|.++|++|+++|+++|++|++|+++|++|+
T Consensus 1 v~lKEIr~~~~I~~hDl~~K~k~a~~FL~~G~kVKv~v~frGRe~~~~e~g~~~l~~~~~~l~~~~~ve~~pk~eGr~~~ 80 (88)
T d1tiga_ 1 INVKEVRLSPTIEEHDFNTKLRNARKFLEKGDKVKATIRFKGRAITHKEIGQRVLDRLSEACADIAVVETAPKMDGRNMF 80 (88)
T ss_dssp CCEEEEEECTTCCHHHHHHHHHHHHHHHHTTCEEEEEEECCSCCTTHHHHHHHHHHHHHHHTTTTEEEEEEEEEETTEEE
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHEEECCCCCCCCCEEE
T ss_conf 91269997068772169999999999985078299999973864548788999999999985535065457665387799
Q ss_pred EEEEECC
Q ss_conf 9992046
Q gi|254780320|r 129 MILSSKC 135 (136)
Q Consensus 129 ~~l~Pkk 135 (136)
|+|+||+
T Consensus 81 ~~l~Pkk 87 (88)
T d1tiga_ 81 LVLAPKN 87 (88)
T ss_dssp EEEEESC
T ss_pred EEEECCC
T ss_conf 9995079
No 3
>d2ifea_ d.68.1.1 (A:) Translation initiation factor IF3, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=99.96 E-value=1.1e-30 Score=201.18 Aligned_cols=87 Identities=46% Similarity=0.779 Sum_probs=84.6
Q ss_pred CCCEEEEEEEECCHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC-CCCCCEE
Q ss_conf 220026897400867999999999999603791999999709743573568999999999842243203677-3248769
Q gi|254780320|r 49 TGIKEVKMRPVIDLHDLQVKLKAIDGFLRDGCKVKISVKFRGREIMHQDLGRELLSNIKERFGEISRIDCEP-KFEGRQM 127 (136)
Q Consensus 49 ~~~KEir~~~~I~~hDl~~K~k~~~~FL~~G~kVki~i~frGRe~~~~e~g~~~l~~i~~~l~~~~~~e~~p-k~~Gr~~ 127 (136)
+++|||||+|+||+|||++|++||++||++||+|+++|+|||||++|+|.|.++|++|+++++++|.+|+.| +++|++|
T Consensus 2 v~vKEirl~~~I~~hDl~~Klk~a~~FL~~G~kVKv~i~frGRE~~~~e~g~~~l~~i~~~l~~v~~ve~~p~k~~Gr~~ 81 (91)
T d2ifea_ 2 IQVKEIKFRPGTDEGDYQVKLRSLIRFLEEGDKAKITLRFRGREMAHQQIGMEVLNRVKDDLQELAVVESFPTKIEGRQM 81 (91)
T ss_dssp CEEEEEEECTTCCHHHHTHHHHHHHHHHHTTEEEEEEECCSSCTTCCSSHHHHHHHHHHHHHTTTEEESCCCCCCCSSCC
T ss_pred EEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCEE
T ss_conf 57889997268770259999999999997799499999980775648888999999999983102288356764558769
Q ss_pred EEEEEECC
Q ss_conf 99992046
Q gi|254780320|r 128 IMILSSKC 135 (136)
Q Consensus 128 ~~~l~Pkk 135 (136)
+|+|+|+|
T Consensus 82 ~~~l~P~k 89 (91)
T d2ifea_ 82 IMVLAPKK 89 (91)
T ss_dssp EEEEEECC
T ss_pred EEEEEECC
T ss_conf 99995179
No 4
>d1tifa_ d.15.8.1 (A:) Translation initiation factor IF3, N-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}
Probab=99.68 E-value=8.5e-18 Score=124.40 Aligned_cols=44 Identities=43% Similarity=0.745 Sum_probs=41.8
Q ss_pred CHHHHHCCCCEEEECCCCCCCEEEEEEHHHHHHHHHHHHHHHHH
Q ss_conf 93378579949999887558779998457888888765432110
Q gi|254780320|r 1 MQMAQEANLDLVEIDSSVTPSVCKILDLRKLRYTIQKNAVEARK 44 (136)
Q Consensus 1 l~~A~~~~lDLV~vs~~~~PPVcKi~dygK~~ye~~Kk~k~~Kk 44 (136)
|++|++.|||||+|||+++||||||||||||+||++|+++++||
T Consensus 33 l~~A~~~glDLV~vs~~a~PPVcKi~dygK~~ye~~kk~ke~kK 76 (76)
T d1tifa_ 33 LEIAARRNLDLVLVAPNAKPPVCRIMDYGKFRFEQQKKEKEARK 76 (76)
T ss_dssp HHHHHHTTCEEEEEETTSSSCEEEEECHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHCCCCEEEECCCCCCCEEEEECCHHHHHHHHHHHHHHCC
T ss_conf 99999819987984577899889997625589999988987259
No 5
>d1hf2a2 c.102.1.1 (A:1-99) Cell-division inhibitor MinC, N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=23.81 E-value=17 Score=15.28 Aligned_cols=46 Identities=9% Similarity=0.368 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 79999999999996037919999997097435735689999999998422432
Q gi|254780320|r 63 HDLQVKLKAIDGFLRDGCKVKISVKFRGREIMHQDLGRELLSNIKERFGEISR 115 (136)
Q Consensus 63 hDl~~K~k~~~~FL~~G~kVki~i~frGRe~~~~e~g~~~l~~i~~~l~~~~~ 115 (136)
+.++-|+.+++.|+.+|+++-+.+- +.+.-..=+-+++..+.+++.
T Consensus 26 neI~~K~~~m~~FFa~gdkI~LmiE-------n~~kk~~DIPkIvs~l~~lgl 71 (99)
T d1hf2a2 26 NAISARITQMGGFFAKGDRISLMIE-------NHNKHSQDIPRIVSHLRNLGL 71 (99)
T ss_dssp HHHHHHHHHTGGGCCTTCEEEEEET-------THHHHGGGHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHCCCCEEEEECC-------CCCCCCHHHHHHHHHHHHCCC
T ss_conf 9999999998866337887998610-------342150117999999997596
No 6
>d1qwga_ c.1.27.1 (A:) (2r)-phospho-3-sulfolactate synthase ComA {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=22.43 E-value=24 Score=14.48 Aligned_cols=96 Identities=19% Similarity=0.222 Sum_probs=51.2
Q ss_pred CHHHHHCCCCEEEECCCCCCCEEEEEEHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCH----HHHHHHHHHHHHHH
Q ss_conf 93378579949999887558779998457888888765432110022222002689740086----79999999999996
Q gi|254780320|r 1 MQMAQEANLDLVEIDSSVTPSVCKILDLRKLRYTIQKNAVEARKKQKSTGIKEVKMRPVIDL----HDLQVKLKAIDGFL 76 (136)
Q Consensus 1 l~~A~~~~lDLV~vs~~~~PPVcKi~dygK~~ye~~Kk~k~~Kkkq~~~~~KEir~~~~I~~----hDl~~K~k~~~~FL 76 (136)
++.+++.|+|-||||.++-+ ++. ..+-+.-++.++ .--..+=|+ .+.-.. -+.+-.++++..||
T Consensus 91 ~~~~~~lGf~~iEiSdg~~~-----i~~-~~~~~~I~~~~~----~G~~V~~Ev--G~K~~~~~~~~~~~~~i~~~~~~L 158 (251)
T d1qwga_ 91 LNECEKLGFEAVEISDGSSD-----ISL-EERNNAIKRAKD----NGFMVLTEV--GKKMPDKDKQLTIDDRIKLINFDL 158 (251)
T ss_dssp HHHHHHHTCCEEEECCSSSC-----CCH-HHHHHHHHHHHH----TTCEEEEEE--CCSSHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHCCCCEEEECCCCCC-----CCH-HHHHHHHHHHHH----CCCEEEECC--CCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 99999859988997598567-----898-999999999985----898895255--578888765569999999999999
Q ss_pred CCCCCEEEEEEECCCCCCC-----H---HHHHHHHHHHHHHHH
Q ss_conf 0379199999970974357-----3---568999999999842
Q gi|254780320|r 77 RDGCKVKISVKFRGREIMH-----Q---DLGRELLSNIKERFG 111 (136)
Q Consensus 77 ~~G~kVki~i~frGRe~~~-----~---e~g~~~l~~i~~~l~ 111 (136)
+.|--- |..-+||... . +.-..+++.|++.+.
T Consensus 159 eaGA~~---ViiEarEsg~~~Gi~~~~g~~r~~~i~~i~~~l~ 198 (251)
T d1qwga_ 159 DAGADY---VIIEGRESGKGKGLFDKEGKVKENELDVLAKNVD 198 (251)
T ss_dssp HHTCSE---EEECCTTTCCSSTTBCTTSCBCHHHHHHHHTTSC
T ss_pred HCCCCE---EEEEHHHCCCCCCEECCCCCHHHHHHHHHHHHCC
T ss_conf 778723---6742443077622246887712889999997488
No 7
>d1u83a_ c.1.27.1 (A:) (2r)-phospho-3-sulfolactate synthase ComA {Bacillus subtilis [TaxId: 1423]}
Probab=19.76 E-value=27 Score=14.14 Aligned_cols=92 Identities=13% Similarity=0.108 Sum_probs=47.4
Q ss_pred CHHHHHCCCCEEEECCCCCCCEEEEEEHHHHHHHHHHHHHHHHHCCCCCCCEEEEEE-----EECCHHHHHHHHHHHHHH
Q ss_conf 933785799499998875587799984578888887654321100222220026897-----400867999999999999
Q gi|254780320|r 1 MQMAQEANLDLVEIDSSVTPSVCKILDLRKLRYTIQKNAVEARKKQKSTGIKEVKMR-----PVIDLHDLQVKLKAIDGF 75 (136)
Q Consensus 1 l~~A~~~~lDLV~vs~~~~PPVcKi~dygK~~ye~~Kk~k~~Kkkq~~~~~KEir~~-----~~I~~hDl~~K~k~~~~F 75 (136)
++.+++.|+|-||||.++-+ ++.. .+-+.-++.+ + .-..+-|+--+ .... ..-.++++..|
T Consensus 92 ~~~~~~lGf~~iEiSdg~i~-----i~~~-~~~~~I~~~~---~--~~~V~sEvG~K~~~~~~~~~---~~~~i~~~~~~ 157 (249)
T d1u83a_ 92 HRYCTYFGCEYIEISNGTLP-----MTNK-EKAAYIADFS---D--EFLVLSEVGSKDAELASRQS---SEEWLEYIVED 157 (249)
T ss_dssp HHHHHHTTCSEEEECCSSSC-----CCHH-HHHHHHHHHT---T--TSEEEEECSCCC------CC---STHHHHHHHHH
T ss_pred HHHHHHCCCCEEEECCCCCC-----CCHH-HHHHHHHHHH---H--CCEECCCCCCCCCCCCCCCC---HHHHHHHHHHH
T ss_conf 99999859988997798455-----8999-9999999999---6--69525535776764457789---99999999999
Q ss_pred HCCCCCEEEEEEECCCCCC----CHH---HHHHHHHHHHHH
Q ss_conf 6037919999997097435----735---689999999998
Q gi|254780320|r 76 LRDGCKVKISVKFRGREIM----HQD---LGRELLSNIKER 109 (136)
Q Consensus 76 L~~G~kVki~i~frGRe~~----~~e---~g~~~l~~i~~~ 109 (136)
|+.|-- .|..-+||.. +.+ .-..++++|++.
T Consensus 158 LeaGA~---~ViiEarEsg~~Gi~~~~g~~r~~~i~~ii~~ 195 (249)
T d1u83a_ 158 MEAGAE---KVITEARESGTGGICSSSGDVRFQIVDDIISS 195 (249)
T ss_dssp HHHTEE---EEEEC------------------CCHHHHHTT
T ss_pred HHCCCC---EEEEEHHCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 977880---68863010377777588866148899999983
No 8
>d1p3ra_ b.55.1.2 (A:) Disabled homolog 2 (Dab2) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=16.35 E-value=32 Score=13.67 Aligned_cols=57 Identities=12% Similarity=0.137 Sum_probs=31.0
Q ss_pred CCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEEC
Q ss_conf 379199999970974357356899999999984224320367732487699999204
Q gi|254780320|r 78 DGCKVKISVKFRGREIMHQDLGRELLSNIKERFGEISRIDCEPKFEGRQMIMILSSK 134 (136)
Q Consensus 78 ~G~kVki~i~frGRe~~~~e~g~~~l~~i~~~l~~~~~~e~~pk~~Gr~~~~~l~Pk 134 (136)
.|+.|.+.+++-|..-.....|.+++.+-+..+.........-..-...+.+.+++.
T Consensus 13 ~~~gv~f~vkYLGs~~V~~~~G~~~~~~Ai~~l~~~~~~~k~~~~~~~~V~l~Vs~~ 69 (148)
T d1p3ra_ 13 KGDGVKYKAKLIGIDDVPDARGDKMSQDSMMKLKGMAAAGRSQGQHKQRIWVNISLS 69 (148)
T ss_dssp STTCEEEEEEEEEEEEESSSCCHHHHHHHHHHHHHHHHHHHTTTCCCEEEEEEEETT
T ss_pred CCCCEEEEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECC
T ss_conf 389749999998889936878869999999999986542100157786599999768
No 9
>d2j9ga1 b.84.2.1 (A:331-446) Biotin carboxylase (BC), C-domain {Escherichia coli [TaxId: 562]}
Probab=15.00 E-value=35 Score=13.46 Aligned_cols=58 Identities=14% Similarity=0.177 Sum_probs=39.4
Q ss_pred EECCCCCCCEEEEEEHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCHHHHHHHHHHHHHHHCC
Q ss_conf 998875587799984578888887654321100222220026897400867999999999999603
Q gi|254780320|r 13 EIDSSVTPSVCKILDLRKLRYTIQKNAVEARKKQKSTGIKEVKMRPVIDLHDLQVKLKAIDGFLRD 78 (136)
Q Consensus 13 ~vs~~~~PPVcKi~dygK~~ye~~Kk~k~~Kkkq~~~~~KEir~~~~I~~hDl~~K~k~~~~FL~~ 78 (136)
+|+|.-+|.++||+-+|.-+-+.-.+...+ +.|..+.--...-+|-.++=.-..|.+.
T Consensus 46 ~v~~~YDsmiAKlI~~g~~R~~Ai~~l~~a--------L~e~~I~Gv~TN~~~l~~il~~~~f~~g 103 (116)
T d2j9ga1 46 TVPPYYDSMIGKLICYGENRDVAIARMKNA--------LQELIIDGIKTNVDLQIRIMNDENFQHG 103 (116)
T ss_dssp EECSSSCSEEEEEEEEESSHHHHHHHHHHH--------HHHCEEESSCCSHHHHHHHHTCHHHHHC
T ss_pred EECCCCCHHHHHHHHCCCCHHHHHHHHHHH--------HHHCCCCCCCCCHHHHHHHHCCHHHCCC
T ss_conf 742655567777844078899999999999--------8743224767169999999688634359
No 10
>d1ulza1 b.84.2.1 (A:329-451) Biotin carboxylase (BC), C-domain {Aquifex aeolicus [TaxId: 63363]}
Probab=13.23 E-value=36 Score=13.40 Aligned_cols=58 Identities=10% Similarity=0.106 Sum_probs=38.9
Q ss_pred EECCCCCCCEEEEEEHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCHHHHHHHHHHHHHHHCC
Q ss_conf 998875587799984578888887654321100222220026897400867999999999999603
Q gi|254780320|r 13 EIDSSVTPSVCKILDLRKLRYTIQKNAVEARKKQKSTGIKEVKMRPVIDLHDLQVKLKAIDGFLRD 78 (136)
Q Consensus 13 ~vs~~~~PPVcKi~dygK~~ye~~Kk~k~~Kkkq~~~~~KEir~~~~I~~hDl~~K~k~~~~FL~~ 78 (136)
.|+|.-+|.++||+-+|.-+-+.-.+.+.+ +.|..+.--...-+|-..+-.-..|...
T Consensus 48 ~v~~~YDsmiAKlIv~g~~R~~Ai~rl~~a--------L~e~~I~Gv~TNi~fl~~il~~~~F~~g 105 (123)
T d1ulza1 48 EVTPYYDSMIAKLITWAPTWDEAVERMRAA--------LETYEITGVKTTIPLLINIMKEKDFKAG 105 (123)
T ss_dssp BCCSSSCCEEEEEEEEESSHHHHHHHHHHH--------HHTCEECSSCCSHHHHHHHHHCHHHHHT
T ss_pred EECCCHHHHHHHHHHHCCCHHHHHHHHHHH--------HHHHCCCCCCCCHHHHHHHHCCHHHCCC
T ss_conf 832214277887875175389999999999--------9873057767369999999678303369
Done!