RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780320|ref|YP_003064733.1| translation initiation factor
IF-3 [Candidatus Liberibacter asiaticus str. psy62]
(136 letters)
>gnl|CDD|178804 PRK00028, infC, translation initiation factor IF-3; Reviewed.
Length = 177
Score = 175 bits (446), Expect = 4e-45
Identities = 68/134 (50%), Positives = 94/134 (70%)
Query: 1 MQMAQEANLDLVEIDSSVTPSVCKILDLRKLRYTIQKNAVEARKKQKSTGIKEVKMRPVI 60
+++A+EA LDLVEI + P VCKI+D K +Y +K EA+KKQK +KE+K RP I
Sbjct: 41 LELAEEAGLDLVEISPNAKPPVCKIMDYGKFKYEQKKKQKEAKKKQKVIEVKEIKFRPKI 100
Query: 61 DLHDLQVKLKAIDGFLRDGCKVKISVKFRGREIMHQDLGRELLSNIKERFGEISRIDCEP 120
D HD + KLK FL G KVK++++FRGREI H++LG ELL + E +I++++ EP
Sbjct: 101 DEHDYETKLKHARRFLEKGDKVKVTLRFRGREIAHKELGMELLERVAEDLEDIAKVEQEP 160
Query: 121 KFEGRQMIMILSSK 134
K EGRQMIM+L+ K
Sbjct: 161 KMEGRQMIMVLAPK 174
>gnl|CDD|129272 TIGR00168, infC, translation initiation factor IF-3. render its
expression particularly sensitive to excess of its gene
product IF-3 thereby regulating its own expression.
Length = 165
Score = 137 bits (348), Expect = 6e-34
Identities = 63/135 (46%), Positives = 85/135 (62%), Gaps = 1/135 (0%)
Query: 1 MQMAQEANLDLVEIDSSVTPSVCKILDLRKLRYTIQKNAVEARKKQKSTGIKEVKMRPVI 60
+++A+EA LDLV I + P VCKI+D K +Y +K EA+K QK +KEVKMRP I
Sbjct: 29 LEIAEEAGLDLVLISPNAKPPVCKIMDYGKYKYEQEKKKKEAKKNQKIIQVKEVKMRPTI 88
Query: 61 DLHDLQVKLKAIDGFLRDGCKVKISVKFRGREIMHQDLGRELLSNIKERFGEISRIDCEP 120
D HDLQ KLK FL G KVK +V+FRGRE H +LG ++L +++ ++ P
Sbjct: 89 DEHDLQFKLKQAIRFLEKGDKVKFTVRFRGRESTHIELGEKVLDRFYTDVADVAEVEKPP 148
Query: 121 -KFEGRQMIMILSSK 134
K EGR M M+L+ K
Sbjct: 149 TKSEGRMMSMLLAPK 163
>gnl|CDD|168302 PRK05940, PRK05940, anthranilate synthase component I-like protein;
Validated.
Length = 463
Score = 27.8 bits (62), Expect = 0.98
Identities = 16/30 (53%), Positives = 17/30 (56%)
Query: 96 QDLGRELLSNIKERFGEISRIDCEPKFEGR 125
Q L ELLSNIKER I +D E GR
Sbjct: 286 QQLAEELLSNIKERAEHIMLVDLERNDLGR 315
>gnl|CDD|184640 PRK14351, ligA, NAD-dependent DNA ligase LigA; Provisional.
Length = 689
Score = 27.4 bits (61), Expect = 1.3
Identities = 9/25 (36%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Query: 100 RELLSNIKERFGEISRIDCEPKFEG 124
RE ++ G + + CEPKF+G
Sbjct: 119 REFDERVRREVGAVEYV-CEPKFDG 142
>gnl|CDD|178545 PLN02960, PLN02960, alpha-amylase.
Length = 897
Score = 27.1 bits (60), Expect = 1.6
Identities = 16/75 (21%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
Query: 37 KNAVEARKKQKSTGIKEVKMRPVIDLHDLQVKLKAIDGFLRDGCKVKISVKFRGREIMHQ 96
+ + +++Q+ E + PV L L + +A FLR+ K ++K EI +
Sbjct: 50 QPKQKKKRQQEPGSDAEAGVDPVGFLTRLGISDRAFAQFLRERHK---ALKDLKWEIFKR 106
Query: 97 DLGRELLSNIKERFG 111
+ + ++ E G
Sbjct: 107 HIDLKEFASGFELLG 121
>gnl|CDD|162719 TIGR02129, hisA_euk, phosphoribosylformimino-5-aminoimidazole
carboxamide ribotide isomerase, eukaryotic type. This
enzyme acts in the biosynthesis of histidine and has
been characterized in S. cerevisiae and Arabidopsis
where it complements the E. coli HisA gene. In
eukaryotes the gene is known as HIS6. In bacteria, this
gene is found in Fibrobacter succinogenes, presumably
due to lateral gene transfer from plants in the rumen
gut.
Length = 253
Score = 26.7 bits (59), Expect = 2.4
Identities = 10/25 (40%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Query: 54 VKMRPVIDLHDLQVKLKAIDGFLRD 78
K RP ID+H+ +VK + + G L
Sbjct: 1 TKFRPCIDIHNGKVK-QIVGGTLTS 24
>gnl|CDD|178065 PLN02446, PLN02446,
(5-phosphoribosyl)-5-[(5-
phosphoribosylamino)methylideneamino]
imidazole-4-carboxamide isomerase.
Length = 262
Score = 26.2 bits (58), Expect = 2.6
Identities = 10/25 (40%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Query: 54 VKMRPVIDLHDLQVKLKAIDGFLRD 78
V+ RP ID+H +VK + + L+D
Sbjct: 1 VRFRPCIDIHKGKVK-QIVGSTLKD 24
>gnl|CDD|178399 PLN02802, PLN02802, triacylglycerol lipase.
Length = 509
Score = 26.3 bits (58), Expect = 2.9
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 63 HDLQVKLKAIDGFLRDGC 80
HDL+ L +DGFL C
Sbjct: 441 HDLEAYLHLVDGFLGSNC 458
>gnl|CDD|178221 PLN02611, PLN02611, glutamate--cysteine ligase.
Length = 482
Score = 25.1 bits (55), Expect = 6.0
Identities = 17/53 (32%), Positives = 22/53 (41%), Gaps = 19/53 (35%)
Query: 74 GFLRDGCKVKISVKFR-GREIMHQDLG--------------RELLSNIKERFG 111
+L GCK K K+R G E H+ G +LL + ERFG
Sbjct: 56 AYLASGCKPK--EKWRIGTE--HEKFGFELATLRPMKYDQIAQLLEGLAERFG 104
>gnl|CDD|162699 TIGR02094, more_P_ylases, alpha-glucan phosphorylases. This
family consists of known phosphorylases, and homologs
believed to share the function of using inorganic
phosphate to cleave an alpha 1,4 linkage between the
terminal glucose residue and the rest of the polymer
(maltodextrin, glycogen, etc.). The name of the glucose
storage polymer substrate, and therefore the name of
this enzyme, depends on the chain lengths and branching
patterns. A number of the members of this family have
been shown to operate on small maltodextrins, as may be
obtained by utilization of exogenous sources. This
family represents a distinct clade from the related
family modeled by TIGR02093/PF00343.
Length = 601
Score = 25.0 bits (55), Expect = 7.1
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
Query: 58 PVIDLHDLQVKLKAIDGFLRDGCKVKISVKFRGREI 93
P D L ++ K +D DG +KISV+ RGR++
Sbjct: 66 PNNDFESLPIE-KVLD---TDGKWLKISVRIRGRDV 97
>gnl|CDD|180214 PRK05704, PRK05704, dihydrolipoamide succinyltransferase;
Validated.
Length = 407
Score = 24.8 bits (55), Expect = 7.4
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 7/37 (18%)
Query: 30 KLRYTIQKNAVEARKKQKSTGI----KEVKMRPVIDL 62
+LR TI + +EA Q +T + EV M PV+DL
Sbjct: 185 RLRKTIAERLLEA---QNTTAMLTTFNEVDMTPVMDL 218
>gnl|CDD|165951 PLN02310, PLN02310, triacylglycerol lipase.
Length = 405
Score = 24.6 bits (53), Expect = 8.5
Identities = 11/45 (24%), Positives = 24/45 (53%), Gaps = 6/45 (13%)
Query: 61 DLHDLQVKLKAIDGFLRD------GCKVKISVKFRGREIMHQDLG 99
H+L++ L IDGF + + +++ +G +++ +DLG
Sbjct: 325 GCHNLELYLHLIDGFHSEDSKFRWNARRDLALVNKGSDMLIEDLG 369
>gnl|CDD|165890 PLN02247, PLN02247, indole-3-acetic acid-amido synthetase.
Length = 606
Score = 24.5 bits (53), Expect = 9.7
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Query: 56 MRPVIDLHDLQVKLKAIDGFLRDGCKVKISVKFRGREIMHQDLGRELLS 104
M P D +D + LK ++ + C+++ V EI+ Q+ G E L
Sbjct: 1 MLPSYDPNDNEAGLKLLEDLTTNACQIQQQVL---EEILTQNAGTEYLR 46
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.322 0.138 0.382
Gapped
Lambda K H
0.267 0.0760 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 2,095,945
Number of extensions: 123781
Number of successful extensions: 233
Number of sequences better than 10.0: 1
Number of HSP's gapped: 232
Number of HSP's successfully gapped: 22
Length of query: 136
Length of database: 5,994,473
Length adjustment: 83
Effective length of query: 53
Effective length of database: 4,201,009
Effective search space: 222653477
Effective search space used: 222653477
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (23.7 bits)