RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|254780320|ref|YP_003064733.1| translation initiation factor
IF-3 [Candidatus Liberibacter asiaticus str. psy62]
(136 letters)
>2ife_A Protein (translation initiation factor IF3); gene
regulation; NMR {Escherichia coli} (A:)
Length = 100
Score = 105 bits (263), Expect = 3e-24
Identities = 44/95 (46%), Positives = 66/95 (69%), Gaps = 1/95 (1%)
Query: 41 EARKKQKSTGIKEVKMRPVIDLHDLQVKLKAIDGFLRDGCKVKISVKFRGREIMHQDLGR 100
+KKQK +KE+K RP D D QVKL+++ FL +G K KI+++FRGRE+ HQ +G
Sbjct: 3 FQKKKQKVIQVKEIKFRPGTDEGDYQVKLRSLIRFLEEGDKAKITLRFRGREMAHQQIGM 62
Query: 101 ELLSNIKERFGEISRIDCEP-KFEGRQMIMILSSK 134
E+L+ +K+ E++ ++ P K EGRQMIM+L+ K
Sbjct: 63 EVLNRVKDDLQELAVVESFPTKIEGRQMIMVLAPK 97
>2crq_A Mitochondrial translational initiation factor 3; ribosome,
structural genomics, NPPSFA; NMR {Mus musculus} (A:)
Length = 112
Score = 104 bits (260), Expect = 5e-24
Identities = 20/96 (20%), Positives = 37/96 (38%), Gaps = 2/96 (2%)
Query: 41 EARKKQKSTGIKEVKMRPVIDLHDLQVKLKAIDGFLRDGCKVKISVKFRGREIMHQDLGR 100
+ K T KE+ I HDL K K I ++ V++++K R ++
Sbjct: 5 SSGPKTGPTMTKELVFSSNIGQHDLDTKSKQIQQWIEKKYHVQVTIKRRKDAEQSEEETE 64
Query: 101 ELLSNIKERFGEISRIDCEPK--FEGRQMIMILSSK 134
E+ + I + +I+ PK G + +
Sbjct: 65 EIFNQILQTMPDIATFSSRPKAIRGGTASMCVFRHL 100
>1tig_A IF3-C, translation initiation factor 3; IF3 C-terminal
domain, ribosome binding factor; 2.00A {Geobacillus
stearothermophilus} (A:)
Length = 94
Score = 103 bits (259), Expect = 8e-24
Identities = 34/90 (37%), Positives = 57/90 (63%)
Query: 45 KQKSTGIKEVKMRPVIDLHDLQVKLKAIDGFLRDGCKVKISVKFRGREIMHQDLGRELLS 104
KQK +KEV++ P I+ HD KL+ FL G KVK +++F+GR I H+++G+ +L
Sbjct: 1 KQKVINVKEVRLSPTIEEHDFNTKLRNARKFLEKGDKVKATIRFKGRAITHKEIGQRVLD 60
Query: 105 NIKERFGEISRIDCEPKFEGRQMIMILSSK 134
+ E +I+ ++ PK +GR M ++L+ K
Sbjct: 61 RLSEACADIAVVETAPKMDGRNMFLVLAPK 90
>1i96_V Translation initiation factor IF3; 30S ribosome; HET: WO2;
4.20A {Thermus thermophilus} (V:)
Length = 89
Score = 100 bits (251), Expect = 8e-23
Identities = 33/84 (39%), Positives = 54/84 (64%)
Query: 51 IKEVKMRPVIDLHDLQVKLKAIDGFLRDGCKVKISVKFRGREIMHQDLGRELLSNIKERF 110
+K +K R ID HD Q KL I FL++G KVK+++ FRGRE+ H +LG +L+ + E
Sbjct: 2 VKSIKFRVKIDEHDYQTKLGHIKRFLQEGHKVKVTIMFRGREVAHPELGERILNRVTEDL 61
Query: 111 GEISRIDCEPKFEGRQMIMILSSK 134
+++ ++ +P+ GR M M+L+
Sbjct: 62 KDLAVVEMKPEMLGRDMNMLLAPV 85
>1tif_A IF3-N, translation initiation factor 3; IF3 N-terminal
domain, ribosome binding factor; 1.80A {Geobacillus
stearothermophilus} (A:)
Length = 78
Score = 51.6 bits (124), Expect = 4e-08
Identities = 19/44 (43%), Positives = 27/44 (61%)
Query: 1 MQMAQEANLDLVEIDSSVTPSVCKILDLRKLRYTIQKNAVEARK 44
+++A NLDLV + + P VC+I+D K R+ QK EARK
Sbjct: 35 LEIAARRNLDLVLVAPNAKPPVCRIMDYGKFRFEQQKKEKEARK 78
>1n2m_A PVLARGDC, pyruvoyl-dependent arginine decarboxylase;
pyruvoyl group, pyruvate, agmatine, lyase; 1.90A
{Methanocaldococcus jannaschii} (A:)
Length = 165
Score = 25.8 bits (57), Expect = 1.9
Identities = 9/37 (24%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 7 ANLDLVEIDSSVTPSVCKILDLRKLRYTIQKNAVEAR 43
N++L+ I S++ P +I+ L KL
Sbjct: 44 GNVNLIRI-SAIMPPEAEIVPLPKLPMGALVPTAYGY 79
>3kdq_A Uncharacterized conserved protein; functionally unknown
protein,corynebacterium diphtheriae, structural
genomics, PSI-2; 3.00A {Corynebacterium diphtheriae}
(A:)
Length = 154
Score = 25.9 bits (57), Expect = 2.1
Identities = 10/67 (14%), Positives = 20/67 (29%)
Query: 12 VEIDSSVTPSVCKILDLRKLRYTIQKNAVEARKKQKSTGIKEVKMRPVIDLHDLQVKLKA 71
++ ++ L K R A + +Q E+K D +++ K
Sbjct: 73 FSEGXTLADALSVRDALLKKRTLYSDLADQLTSRQDRYSRSEIKYVATXDAREIRKKADL 132
Query: 72 IDGFLRD 78
R
Sbjct: 133 AAKEYRQ 139
>3b3f_A Histone-arginine methyltransferase CARM1; protein arginine
methyltransferase, catalytic domain, alternative
splicing, chromatin regulator; HET: SAH; 2.20A {Rattus
norvegicus} PDB: 3b3g_A 2v74_B* 2v7e_A
(A:150-163,A:199-341)
Length = 157
Score = 25.7 bits (56), Expect = 2.3
Identities = 5/42 (11%), Positives = 15/42 (35%), Gaps = 4/42 (9%)
Query: 5 QEANLDLVEIDSSVTPSVCKILDLRKLRYTIQKNAVEARKKQ 46
Q+ +D +I + SV ++ ++ + +
Sbjct: 14 QQPVVDTFDIRILMAKSVKYTVNF----LEAKEGDLHRIEIP 51
>3ice_A Transcription termination factor RHO; transcription, ATPase,
hexamer, helicase, RNA, RECA, OB fold, motor,
ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A
{Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A*
1xpr_A* 1xpu_A* 2ht1_A (A:142-422)
Length = 281
Score = 24.5 bits (52), Expect = 5.8
Identities = 4/65 (6%), Positives = 16/65 (24%), Gaps = 1/65 (1%)
Query: 65 LQVKLKAIDGFLRDGCKVKISVKFRGREIMHQDLGRELLSNIKERFGEISRIDCEPKFEG 124
+ + +D G + + + L + + +I +
Sbjct: 17 EDLTARVLDLASPIGRGQRGLI-VAPPKAGKTXLLQNIAQSIAYNHPDCVLXVLLIDERP 75
Query: 125 RQMIM 129
++
Sbjct: 76 EEVTE 80
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.322 0.138 0.382
Gapped
Lambda K H
0.267 0.0669 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 982,349
Number of extensions: 41575
Number of successful extensions: 86
Number of sequences better than 10.0: 1
Number of HSP's gapped: 84
Number of HSP's successfully gapped: 12
Length of query: 136
Length of database: 4,956,049
Length adjustment: 80
Effective length of query: 56
Effective length of database: 2,251,649
Effective search space: 126092344
Effective search space used: 126092344
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.2 bits)