RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780320|ref|YP_003064733.1| translation initiation factor
IF-3 [Candidatus Liberibacter asiaticus str. psy62]
         (136 letters)



>d1tiga_ d.68.1.1 (A:) Translation initiation factor IF3, C-terminal
           domain {Bacillus stearothermophilus [TaxId: 1422]}
          Length = 88

 Score = 98.6 bits (246), Expect = 1e-22
 Identities = 31/84 (36%), Positives = 54/84 (64%)

Query: 51  IKEVKMRPVIDLHDLQVKLKAIDGFLRDGCKVKISVKFRGREIMHQDLGRELLSNIKERF 110
           +KEV++ P I+ HD   KL+    FL  G KVK +++F+GR I H+++G+ +L  + E  
Sbjct: 3   VKEVRLSPTIEEHDFNTKLRNARKFLEKGDKVKATIRFKGRAITHKEIGQRVLDRLSEAC 62

Query: 111 GEISRIDCEPKFEGRQMIMILSSK 134
            +I+ ++  PK +GR M ++L+ K
Sbjct: 63  ADIAVVETAPKMDGRNMFLVLAPK 86


>gi|218296413|ref|ZP_03497156.1|(69-154:157) translation initiation
           factor IF-3 [Thermus aquaticus Y51MC23] 
           gi|218243207|gb|EED09738.1| translation initiation
           factor IF-3 [Thermus aquaticus Y51MC23]  E=2e-35
           s/c=1.74 id=82% cov=101%
          Length = 86

 Score = 98.3 bits (245), Expect = 2e-22
 Identities = 32/84 (38%), Positives = 52/84 (61%)

Query: 51  IKEVKMRPVIDLHDLQVKLKAIDGFLRDGCKVKISVKFRGREIMHQDLGRELLSNIKERF 110
           +K +K R  ID HD Q KL  I  FL +G KVK+++ FRGRE+ + +LG+ LL  + +  
Sbjct: 2   VKSIKFRVKIDDHDYQTKLNHIKRFLEEGHKVKVTIMFRGREMSYPELGQRLLERVAKDL 61

Query: 111 GEISRIDCEPKFEGRQMIMILSSK 134
             ++ ++ +P+  GR M M+L+  
Sbjct: 62  EGLAVVEMKPELLGRDMNMLLAPA 85


>d2ifea_ d.68.1.1 (A:) Translation initiation factor IF3, C-terminal
           domain {Escherichia coli [TaxId: 562]}
          Length = 91

 Score = 97.5 bits (243), Expect = 3e-22
 Identities = 40/85 (47%), Positives = 61/85 (71%), Gaps = 1/85 (1%)

Query: 51  IKEVKMRPVIDLHDLQVKLKAIDGFLRDGCKVKISVKFRGREIMHQDLGRELLSNIKERF 110
           +KE+K RP  D  D QVKL+++  FL +G K KI+++FRGRE+ HQ +G E+L+ +K+  
Sbjct: 4   VKEIKFRPGTDEGDYQVKLRSLIRFLEEGDKAKITLRFRGREMAHQQIGMEVLNRVKDDL 63

Query: 111 GEISRIDCEP-KFEGRQMIMILSSK 134
            E++ ++  P K EGRQMIM+L+ K
Sbjct: 64  QELAVVESFPTKIEGRQMIMVLAPK 88


>d1tifa_ d.15.8.1 (A:) Translation initiation factor IF3,
          N-terminal domain {Bacillus stearothermophilus [TaxId:
          1422]}
          Length = 76

 Score = 44.7 bits (106), Expect = 3e-06
 Identities = 19/44 (43%), Positives = 27/44 (61%)

Query: 1  MQMAQEANLDLVEIDSSVTPSVCKILDLRKLRYTIQKNAVEARK 44
          +++A   NLDLV +  +  P VC+I+D  K R+  QK   EARK
Sbjct: 33 LEIAARRNLDLVLVAPNAKPPVCRIMDYGKFRFEQQKKEKEARK 76


>d1jkva_ a.25.1.3 (A:) Manganese catalase (T-catalase)
           {Lactobacillus plantarum [TaxId: 1590]}
          Length = 266

 Score = 25.7 bits (56), Expect = 1.4
 Identities = 7/23 (30%), Positives = 12/23 (52%)

Query: 91  REIMHQDLGRELLSNIKERFGEI 113
           RE  HQ    +    ++E++G I
Sbjct: 177 RETQHQLQFMKAQEELEEKYGII 199


>d1k62b_ a.127.1.1 (B:) Argininosuccinate lyase/delta-crystallin
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 459

 Score = 24.1 bits (51), Expect = 4.9
 Identities = 8/46 (17%), Positives = 14/46 (30%), Gaps = 8/46 (17%)

Query: 10  DLVEIDSSVTPSVCKILDLRKLRYTIQKNAVEARKKQKSTGIKEVK 55
           +L  I    +  V  + D         +++VE       T    V 
Sbjct: 407 ELQTISPLFSGDVICVWDY--------RHSVEQYGALGGTARSSVD 444


>d1o22a_ d.238.1.1 (A:) Hypothetical protein TM0875 {Thermotoga
          maritima [TaxId: 2336]}
          Length = 149

 Score = 23.1 bits (49), Expect = 8.2
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 2/51 (3%)

Query: 43 RKKQKSTGIKEVKMRPVIDLHDLQVKLKAIDGFLRDGCKVKISVKFRGREI 93
           KK K  GI E KM+ +   ++  V L+ ++  L     +KISV   G E+
Sbjct: 7  YKKGKEFGILEKKMKEI--FNETGVSLEPVNSELIGRIFLKISVLEEGEEV 55


>d1tjva_ a.127.1.1 (A:) Argininosuccinate lyase/delta-crystallin
           {Domestic duck (Anas platyrhynchos), delta-crystallin
           [TaxId: 8839]}
          Length = 449

 Score = 23.0 bits (48), Expect = 9.7
 Identities = 9/46 (19%), Positives = 14/46 (30%), Gaps = 8/46 (17%)

Query: 10  DLVEIDSSVTPSVCKILDLRKLRYTIQKNAVEARKKQKSTGIKEVK 55
           DL  I    +  V ++ +          N+VE       T    V 
Sbjct: 396 DLKSISPQFSSDVSQVFNF--------VNSVEQYTALAGTAKSSVT 433


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.138    0.382 

Gapped
Lambda     K      H
   0.267   0.0686    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 489,991
Number of extensions: 22050
Number of successful extensions: 63
Number of sequences better than 10.0: 1
Number of HSP's gapped: 62
Number of HSP's successfully gapped: 11
Length of query: 136
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 60
Effective length of database: 1,364,116
Effective search space: 81846960
Effective search space used: 81846960
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (22.4 bits)