RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254780320|ref|YP_003064733.1| translation initiation factor IF-3 [Candidatus Liberibacter asiaticus str. psy62] (136 letters) >d1tiga_ d.68.1.1 (A:) Translation initiation factor IF3, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]} Length = 88 Score = 98.6 bits (246), Expect = 1e-22 Identities = 31/84 (36%), Positives = 54/84 (64%) Query: 51 IKEVKMRPVIDLHDLQVKLKAIDGFLRDGCKVKISVKFRGREIMHQDLGRELLSNIKERF 110 +KEV++ P I+ HD KL+ FL G KVK +++F+GR I H+++G+ +L + E Sbjct: 3 VKEVRLSPTIEEHDFNTKLRNARKFLEKGDKVKATIRFKGRAITHKEIGQRVLDRLSEAC 62 Query: 111 GEISRIDCEPKFEGRQMIMILSSK 134 +I+ ++ PK +GR M ++L+ K Sbjct: 63 ADIAVVETAPKMDGRNMFLVLAPK 86 >gi|218296413|ref|ZP_03497156.1|(69-154:157) translation initiation factor IF-3 [Thermus aquaticus Y51MC23] gi|218243207|gb|EED09738.1| translation initiation factor IF-3 [Thermus aquaticus Y51MC23] E=2e-35 s/c=1.74 id=82% cov=101% Length = 86 Score = 98.3 bits (245), Expect = 2e-22 Identities = 32/84 (38%), Positives = 52/84 (61%) Query: 51 IKEVKMRPVIDLHDLQVKLKAIDGFLRDGCKVKISVKFRGREIMHQDLGRELLSNIKERF 110 +K +K R ID HD Q KL I FL +G KVK+++ FRGRE+ + +LG+ LL + + Sbjct: 2 VKSIKFRVKIDDHDYQTKLNHIKRFLEEGHKVKVTIMFRGREMSYPELGQRLLERVAKDL 61 Query: 111 GEISRIDCEPKFEGRQMIMILSSK 134 ++ ++ +P+ GR M M+L+ Sbjct: 62 EGLAVVEMKPELLGRDMNMLLAPA 85 >d2ifea_ d.68.1.1 (A:) Translation initiation factor IF3, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 91 Score = 97.5 bits (243), Expect = 3e-22 Identities = 40/85 (47%), Positives = 61/85 (71%), Gaps = 1/85 (1%) Query: 51 IKEVKMRPVIDLHDLQVKLKAIDGFLRDGCKVKISVKFRGREIMHQDLGRELLSNIKERF 110 +KE+K RP D D QVKL+++ FL +G K KI+++FRGRE+ HQ +G E+L+ +K+ Sbjct: 4 VKEIKFRPGTDEGDYQVKLRSLIRFLEEGDKAKITLRFRGREMAHQQIGMEVLNRVKDDL 63 Query: 111 GEISRIDCEP-KFEGRQMIMILSSK 134 E++ ++ P K EGRQMIM+L+ K Sbjct: 64 QELAVVESFPTKIEGRQMIMVLAPK 88 >d1tifa_ d.15.8.1 (A:) Translation initiation factor IF3, N-terminal domain {Bacillus stearothermophilus [TaxId: 1422]} Length = 76 Score = 44.7 bits (106), Expect = 3e-06 Identities = 19/44 (43%), Positives = 27/44 (61%) Query: 1 MQMAQEANLDLVEIDSSVTPSVCKILDLRKLRYTIQKNAVEARK 44 +++A NLDLV + + P VC+I+D K R+ QK EARK Sbjct: 33 LEIAARRNLDLVLVAPNAKPPVCRIMDYGKFRFEQQKKEKEARK 76 >d1jkva_ a.25.1.3 (A:) Manganese catalase (T-catalase) {Lactobacillus plantarum [TaxId: 1590]} Length = 266 Score = 25.7 bits (56), Expect = 1.4 Identities = 7/23 (30%), Positives = 12/23 (52%) Query: 91 REIMHQDLGRELLSNIKERFGEI 113 RE HQ + ++E++G I Sbjct: 177 RETQHQLQFMKAQEELEEKYGII 199 >d1k62b_ a.127.1.1 (B:) Argininosuccinate lyase/delta-crystallin {Human (Homo sapiens) [TaxId: 9606]} Length = 459 Score = 24.1 bits (51), Expect = 4.9 Identities = 8/46 (17%), Positives = 14/46 (30%), Gaps = 8/46 (17%) Query: 10 DLVEIDSSVTPSVCKILDLRKLRYTIQKNAVEARKKQKSTGIKEVK 55 +L I + V + D +++VE T V Sbjct: 407 ELQTISPLFSGDVICVWDY--------RHSVEQYGALGGTARSSVD 444 >d1o22a_ d.238.1.1 (A:) Hypothetical protein TM0875 {Thermotoga maritima [TaxId: 2336]} Length = 149 Score = 23.1 bits (49), Expect = 8.2 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 2/51 (3%) Query: 43 RKKQKSTGIKEVKMRPVIDLHDLQVKLKAIDGFLRDGCKVKISVKFRGREI 93 KK K GI E KM+ + ++ V L+ ++ L +KISV G E+ Sbjct: 7 YKKGKEFGILEKKMKEI--FNETGVSLEPVNSELIGRIFLKISVLEEGEEV 55 >d1tjva_ a.127.1.1 (A:) Argininosuccinate lyase/delta-crystallin {Domestic duck (Anas platyrhynchos), delta-crystallin [TaxId: 8839]} Length = 449 Score = 23.0 bits (48), Expect = 9.7 Identities = 9/46 (19%), Positives = 14/46 (30%), Gaps = 8/46 (17%) Query: 10 DLVEIDSSVTPSVCKILDLRKLRYTIQKNAVEARKKQKSTGIKEVK 55 DL I + V ++ + N+VE T V Sbjct: 396 DLKSISPQFSSDVSQVFNF--------VNSVEQYTALAGTAKSSVT 433 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.322 0.138 0.382 Gapped Lambda K H 0.267 0.0686 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 489,991 Number of extensions: 22050 Number of successful extensions: 63 Number of sequences better than 10.0: 1 Number of HSP's gapped: 62 Number of HSP's successfully gapped: 11 Length of query: 136 Length of database: 2,407,596 Length adjustment: 76 Effective length of query: 60 Effective length of database: 1,364,116 Effective search space: 81846960 Effective search space used: 81846960 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 48 (22.4 bits)