HHsearch alignment for GI: 254780321 and conserved domain: PRK00741
>PRK00741 prfC peptide chain release factor 3; Provisional.
Probab=100.00 E-value=0 Score=670.48 Aligned_cols=358 Identities=25% Similarity=0.446 Sum_probs=312.2
Q ss_pred CHHHCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCC-------CCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEE
Q ss_conf 852531799980138987788999999829805444-------4311305867798719505232799997437884389
Q gi|254780321|r 7 PLSRIRNFSIVAHIDHGKSTLADRFIQHCRGLTERE-------MSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQ 79 (606)
Q Consensus 7 p~~~IRN~~IiaHvDhGKTTL~d~lL~~tg~i~~~~-------~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~ 79 (606)
T Consensus 6 ei~~~RniaIi~H~dAGKTTLtE~lL~~~GaI~~~G~V~~~~~~~~~~sD~~~~E~~RgiSI~ssv~~~e~-----~~~~ 80 (526)
T PRK00741 6 EVAKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPY-----RDCL 80 (526)
T ss_pred HHHCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCHHHHHCCCEEECCEEEEEE-----CCEE
T ss_conf 87611779999378989899999999746752448466314678864678858899759648615177867-----8989
Q ss_pred EEEEECCCCCHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 99961787300279999999730268999986878865589999999970996799832678875321133888775553
Q gi|254780321|r 80 LNLIDTPGHVDFTYEVSRSLSACEGSLLVVDATQGVEAQTLANVYQAIDNNHEIITVLNKADLPSADPDRVKKQIEETIG 159 (606)
Q Consensus 80 iNlIDTPGH~DF~~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~~~~l~~I~viNKiD~~~A~~e~v~~ei~~~~g 159 (606)
T Consensus 81 iNliDTPGh~DF~~e~~raL~a~D~Av~Vida~~GVe~qTe~~w~~~~~~~iP~i~FINKmDR~~ad~~~~l~ei~~~lg 160 (526)
T PRK00741 81 INLLDTPGHEDFSEDTYRTLTAVDSALMVIDAAKGVEPQTRKLMEVCRLRDTPIFTFINKLDRDGREPLELLDEIEEVLG 160 (526)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHC
T ss_conf 99990989467789999999873759999977755233368999998863998899996567678987898877888747
Q ss_pred HHH-----------------------------------------------------------------------------
Q ss_conf 223-----------------------------------------------------------------------------
Q gi|254780321|r 160 IST----------------------------------------------------------------------------- 162 (606)
Q Consensus 160 ~~~----------------------------------------------------------------------------- 162 (606)
T Consensus 161 ~~~~p~~~Pig~g~~F~GvvDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ee~el~~~~~~~~d~ 240 (526)
T PRK00741 161 IACAPITWPIGMGKRFKGVYDLYNDEVELYQPGHGHTIQEFEIIKGLDNPELDEALGEDLAEQLREELELVQGASNEFDL 240 (526)
T ss_pred CCCEEEEEECCCCCCEEEEEEECCCEEEECCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCH
T ss_conf 87368883036788603788801387998036778840466058778778999875389999755357777315551068
Q ss_pred H--------HHHHHHHHCCCCCCHHHHHHHHHHHCCCCHH-------HHHCCCCCCCCCEE--ECC-CCCEEEEEEECCC
Q ss_conf 2--------1000111002232006787763210001111-------22012331012101--147-5725999981698
Q gi|254780321|r 163 E--------DALLVSAKTGEGIPLLLERIVQQLPSPTSPE-------GANAPLKALLIDSW--YNS-YLGVMVLVRIING 224 (606)
Q Consensus 163 ~--------~ii~vSAktG~GV~~LLd~Iv~~iP~P~~~~-------~~~~Pl~alVfds~--~D~-~~G~I~~~RV~sG 224 (606)
T Consensus 241 ~~~~~G~l~PVf~GSA~~n~GV~~LLd~iv~~~PsP~~r~~~~~~v~p~~~~fsa~VFKiqanmDP~h~griaf~RV~SG 320 (526)
T PRK00741 241 EAFLAGELTPVFFGSALNNFGVQEFLDAFVEWAPAPQPRQTDERVVEPTEEKFSGFVFKIQANMDPKHRDRIAFMRVCSG 320 (526)
T ss_pred HHHHCCCEEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCEEEEEEEEEE
T ss_conf 99973980289962000365699999999997799877777765447877774359999984037542543799997511
Q ss_pred CCCCCCEEEEECCCCCCCCCCCCCCC-CCEEEEHHCCCCCHHHHHHCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCE
Q ss_conf 73558458873355642101222335-54124010124712332201100244445420004667853236455222212
Q gi|254780321|r 225 QLTKGQSIRLMGTNAKYQVERIGILT-PKMIDIEALYPGEIGVMIASIKEVSHTRVGDTITDDSSPTTSALPGFKPIQPV 303 (606)
Q Consensus 225 ~lk~Gd~I~~~~~g~~~~v~~ig~~~-~~~~~v~~l~aGdVG~ii~gik~l~~~~vGDTl~~~~~p~~~~Lp~~~~~~P~ 303 (606)
T Consensus 321 ~l~~g~~v~n~r~gk~eri~~l~~~~g~~r~~V~ea~AGDI----vgl~~~~~~~tGDTL~~~~~l~---~~~Ip~f~P~ 393 (526)
T PRK00741 321 KFEKGMKVRHVRTGKDVRISNALTFMAQDREHVEEAYAGDI----IGLHNHGTIQIGDTFTEGEKLK---FTGIPNFAPE 393 (526)
T ss_pred EECCCCEEEECCCCCEEEHHHHHHHHCCCCEEEEEECCCCE----EEECCCCCCCCCCEECCCCCCC---CCCCCCCCCC
T ss_conf 88579989852579536632677874435235138769989----9971666300375520688521---0688999975
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCC-CCCCCCCCCEEEEEECCHHHHHHHHHHHHHHCCCEEEEECCCCCE
Q ss_conf 664212677024578899998886411221112-567600042028996376789888988866449506973782330
Q gi|254780321|r 304 VFCGLFPVDATQFENLRTAINKLRLNDASFSFE-LENSTALGFGFRCGFLGLLHLEIIQERLEREFSLNLIGTSPSVVY 381 (606)
Q Consensus 304 v~~~i~p~~~~d~~~L~~aL~kL~~~D~sl~~e-~Ets~aLg~Gfr~gglG~LHLeVi~eRL~rEfg~ev~~t~P~V~Y 381 (606)
T Consensus 394 ~~~~v~~~~~~~~kkl~~gL~~L~EEd~~~v~~~~~t~e~i-----l~gmGeLHlEVv~~RLk~eygVev~~e~~~~~~ 467 (526)
T PRK00741 394 LFRRVRLKNPLKQKQLQKGLVQLSEEGAVQVFRPLSNNDLI-----LGAVGQLQFEVVAHRLKNEYNVEAIYEPVGVAT 467 (526)
T ss_pred EEEEEEECCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCEE-----EEEECHHHHHHHHHHHHHHHCCEEEECCCCEEE
T ss_conf 57998879888899999999985547866988738899889-----997168899999999988739728971574379