HHsearch alignment for GI: 254780321 and conserved domain: PRK05306
>PRK05306 infB translation initiation factor IF-2; Validated.
Probab=100.00 E-value=1.3e-42 Score=305.65 Aligned_cols=427 Identities=26% Similarity=0.359 Sum_probs=276.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHHH
Q ss_conf 79998013898778899999982980544443113058677987195052327999974378843899996178730027
Q gi|254780321|r 13 NFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDFT 92 (606)
Q Consensus 13 N~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF~ 92 (606)
T Consensus 343 vvt~mghvdhgkt~lld~~r-~~~-v~~~e~g-------------gitq~iga~~v~~--~~--~~~itf~dtpgh~af~ 403 (839)
T PRK05306 343 VVTIMGHVDHGKTSLLDAIR-KTK-VAAGEAG-------------GITQHIGAYQVET--EN--GKKITFLDTPGHEAFT 403 (839)
T ss_pred EEEEECCCCCCHHHHHHHHH-CCC-CCCCCCC-------------CCCCEEEEEEEEE--CC--CCEEEEECCCCHHHHH
T ss_conf 89885774677314899986-287-5355678-------------7552223499995--69--9879985588558899
Q ss_pred HHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHH------HH
Q ss_conf 999999973026899998687886558999999997099679983267887532113388877555322321------00
Q gi|254780321|r 93 YEVSRSLSACEGSLLVVDATQGVEAQTLANVYQAIDNNHEIITVLNKADLPSADPDRVKKQIEETIGISTED------AL 166 (606)
Q Consensus 93 ~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~~~~l~~I~viNKiD~~~A~~e~v~~ei~~~~g~~~~~------ii 166 (606)
T Consensus 404 ~mr~rga~~tdi~ilvvaaddgv~pqt~eai~~~~~a~vp~ivaink~d~~~a~~~~v~~~l~~-~~~~~e~~gg~~~~v 482 (839)
T PRK05306 404 AMRARGAQVTDIVVLVVAADDGVMPQTIEAINHAKAAGVPIIVAINKIDKPGANPDRVKQELTE-YGLVPEEWGGDTIFV 482 (839)
T ss_pred HHHHCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHH-CCCCHHHCCCCEEEE
T ss_conf 9986357654369999977777567789999999974998899974046788988999999998-498645428944899
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHCCCCCCCCCEEECCCCCEEEEEEECCCCCCCCCEEEEECCCCCCCCCCC
Q ss_conf 01110022320067877632100011112201233101210114757259999816987355845887335564210122
Q gi|254780321|r 167 LVSAKTGEGIPLLLERIVQQLPSPTSPEGANAPLKALLIDSWYNSYLGVMVLVRIINGQLTKGQSIRLMGTNAKYQVERI 246 (606)
Q Consensus 167 ~vSAktG~GV~~LLd~Iv~~iP~P~~~~~~~~Pl~alVfds~~D~~~G~I~~~RV~sG~lk~Gd~I~~~~~g~~~~v~~i 246 (606)
T Consensus 483 ~~sa~~~~~~~~l~e~i~l~ae~~~l~a~~~~~a~g~vie~~~~~~~g~v~t~lv~~gtl~~gd~~v~g~~~g--~vr~m 560 (839)
T PRK05306 483 PVSAKTGEGIDELLEAILLQAEVLELKANPDRPARGVVIEAKLDKGRGPVATVLVQNGTLKVGDIVVAGTTYG--RVRAM 560 (839)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEECCCCCCEEEEEEECCEECCCCEEEEECCCC--CCEEE
T ss_conf 8151578878999999998766520447999861799998775278750589998427132599899810205--51015
Q ss_pred CCCCCCEEEEHHCCCCCHHHHHHCCCCCCCCCCCCEECCCCCCCC-C---------------------CCCC----CCCC
Q ss_conf 233554124010124712332201100244445420004667853-2---------------------3645----5222
Q gi|254780321|r 247 GILTPKMIDIEALYPGEIGVMIASIKEVSHTRVGDTITDDSSPTT-S---------------------ALPG----FKPI 300 (606)
Q Consensus 247 g~~~~~~~~v~~l~aGdVG~ii~gik~l~~~~vGDTl~~~~~p~~-~---------------------~Lp~----~~~~ 300 (606)
T Consensus 561 --~~~~g~~~~~a~Ps~pv-~i~G~~~~P--~aGd~~~~~~~e~~a~~~~~~r~~~~~~~~~~~~~~~~l~~~~~~~~~~ 635 (839)
T PRK05306 561 --VDDNGKRVKEAGPSTPV-EILGLSGVP--QAGDEFVVVEDEKKAREIAEYRQEKAREKKLARKQRVSLENLFAQMKEG 635 (839)
T ss_pred --ECCCCCCCCCCCCCCCE-EEECCCCCC--CCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCC
T ss_conf --88999898714898777-960567899--8888778527889999999999999999987553114698898665226
Q ss_pred -CCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCC--------------CCCCCCCCCEEEEEECCHHHHHHHHHHHH
Q ss_conf -212664212677024578899998886411221112--------------56760004202899637678988898886
Q gi|254780321|r 301 -QPVVFCGLFPVDATQFENLRTAINKLRLNDASFSFE--------------LENSTALGFGFRCGFLGLLHLEIIQERLE 365 (606)
Q Consensus 301 -~P~v~~~i~p~~~~d~~~L~~aL~kL~~~D~sl~~e--------------~Ets~aLg~Gfr~gglG~LHLeVi~eRL~ 365 (606)
T Consensus 636 ~~k~l~~iiK~Dv~Gs~eAi~~~l~~~~~~~v~~~ii~~~vG~itesDv~lA~as~a~iigFnv~------~~~~~~~~a 709 (839)
T PRK05306 636 EVKELNLILKADVQGSVEALSDSLEKLSTDEVKVRIIHSGVGAITESDVTLAAASNAIIIGFNVR------ADAKARKLA 709 (839)
T ss_pred CCEEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHCCCEEEEECCC------CCHHHHHHH
T ss_conf 74278789852765439999999983688737899995167777687898898549889995388------898999999
Q ss_pred HHCCCEEEEECCCCCEEEEEECCCEEECCCHHHCCCHHHHHHHHCCEEEEEEEEC----C----CCCHHHHHHHHHHHHE
Q ss_conf 6449506973782330335315645412696662586778886232699999808----3----1000389998863001
Q gi|254780321|r 366 REFSLNLIGTSPSVVYELYMHDGSMQKLSNPIDMPEVTKIAELREPWIQVTIITP----N----EYLGSILKLCQERRGI 437 (606)
Q Consensus 366 rEfg~ev~~t~P~V~Ykv~~~dG~~~~Vd~p~~~p~~~~i~~i~EPi~~~~I~~P----~----ey~G~Vm~~l~~RRG~ 437 (606)
T Consensus 710 ~~~~v~i~~y--~iIY~~i--d~v------------~~~~~g~l~p~~~e~~~G~a~v~~~f~~~k~g~iag-c~v~~g~ 772 (839)
T PRK05306 710 EQEGVDIRYY--SIIYDLI--DDV------------KAAMSGMLEPEYEEEIIGQAEVREVFKVSKVGTIAG-CMVTEGK 772 (839)
T ss_pred HHCCCEEEEE--CHHHHHH--HHH------------HHHHHCCCCCCEEEEEEEEEEEEEEEECCCCCEEEE-EEEEECE
T ss_conf 9839818992--5688799--999------------999844899732789979999745797588736888-9987188
Q ss_pred EECCCCCC-CE-EEEEEEECHHHHHHHHHHHHHHHCCCEE--EEEEEECCCEECCEE
Q ss_conf 42443368-36-9999996043332204687676357418--889854354643667
Q gi|254780321|r 438 QIDMSHLD-NR-AMIVYELPLNEVIFDFYDRLKSVSKGYA--SFDYNVIDYRDSDLV 490 (606)
Q Consensus 438 ~~~m~~~~-~~-~~i~~~vPl~Eli~~f~~~LkS~T~G~a--s~~ye~~~Y~~~dlv 490 (606)
T Consensus 773 i~~~~~~r~~r~~~~~~~g~~~sl-~~~k~~v~ev~~g~ecgi~~~~~~~~~~gd~i 828 (839)
T PRK05306 773 VKRNAKVRVLRDGVVIYEGELESL-KRFKDDVKEVRAGYECGIGLENYNDIKEGDII 828 (839)
T ss_pred EECCCCEEEEECCEEEEEEEEHHH-HHHHHCCCHHCCCCCCEEEECCCCCCCCCCEE
T ss_conf 964992799879989996263664-11020312323894252673373577669889