HHsearch alignment for GI: 254780321 and conserved domain: PRK13947

>PRK13947 shikimate kinase; Provisional.
Probab=90.84  E-value=0.37  Score=27.24  Aligned_cols=143  Identities=20%  Similarity=0.294  Sum_probs=68.3

Q ss_pred             CEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCH-HHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCC
Q ss_conf             317999801389877889999998298054444311305867-7987195052327999974378843899996178730
Q gi|254780321|r   11 IRNFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMD-IERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHV   89 (606)
Q Consensus        11 IRN~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~-~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~   89 (606)
T Consensus         1 mknI~LiG~mGsGKTtiGk~La~~L~--------~~fiD~D~~Ie~~~g~sI~-----e-------------If~~~GE~   54 (171)
T PRK13947          1 MKNIVLIGFMGTGKTTVGKKVATTLS--------FGFIDTDKEIEKMAGMTVS-----E-------------IFEKDGEV   54 (171)
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHHHC--------CCEEECHHHHHHHCCCCHH-----H-------------HHHHHCHH
T ss_conf             98589979999988999999999979--------6989874999988299889-----9-------------99984899


Q ss_pred             HHHHHHHHHHH---HCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEC------------CCCCCCCCCCCHHHHH
Q ss_conf             02799999997---30268999986878865589999999970996799832------------6788753211338887
Q gi|254780321|r   90 DFTYEVSRSLS---ACEGSLLVVDATQGVEAQTLANVYQAIDNNHEIITVLN------------KADLPSADPDRVKKQI  154 (606)
Q Consensus        90 DF~~EV~r~l~---a~dgaiLvVdA~~Gvq~QT~~~~~~A~~~~l~~I~viN------------KiD~~~A~~e~v~~ei  154 (606)
T Consensus        55 ~FR~~E~~~l~~~~~~~~--~VistGGG~-v~~~~n~~~l~~~g~--vi~L~~~~~~l~~Rl~~~~~RPll~~~~~~~~l  129 (171)
T PRK13947         55 RFRSLEKAAVRKAARLKN--LVIATGGGV-VLNPENIVQLRKNGV--LICLVARPEVILRRIKKKKDRPLLMVGNPEERI  129 (171)
T ss_pred             HHHHHHHHHHHHHCCCCC--EEEECCCCC-CCCHHHHHHHHHCCE--EEEECCCHHHHHHHHHCCCCCCCCCCCCHHHHH
T ss_conf             999999999997403689--799789850-069999999996898--999739999999997289999979899879999


Q ss_pred             HHHHH----HH--HHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf             75553----22--32100011100223200678776321
Q gi|254780321|r  155 EETIG----IS--TEDALLVSAKTGEGIPLLLERIVQQL  187 (606)
Q Consensus       155 ~~~~g----~~--~~~ii~vSAktG~GV~~LLd~Iv~~i  187 (606)
T Consensus       130 ~~l~~~R~~~Y~~Ad~~I~~---~~~s~~ei~~~Ii~~~  165 (171)
T PRK13947        130 RELLKEREPFYRFADFTIDT---SDMTIDEVAEEIIKAY  165 (171)
T ss_pred             HHHHHHHHHHHHHCCEEEEC---CCCCHHHHHHHHHHHH
T ss_conf             99999999999976989889---9899999999999999