HHsearch alignment for GI: 254780321 and conserved domain: PRK13947
>PRK13947 shikimate kinase; Provisional.
Probab=90.84 E-value=0.37 Score=27.24 Aligned_cols=143 Identities=20% Similarity=0.294 Sum_probs=68.3
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCH-HHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCC
Q ss_conf 317999801389877889999998298054444311305867-7987195052327999974378843899996178730
Q gi|254780321|r 11 IRNFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMD-IERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHV 89 (606)
Q Consensus 11 IRN~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~-~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~ 89 (606)
T Consensus 1 mknI~LiG~mGsGKTtiGk~La~~L~--------~~fiD~D~~Ie~~~g~sI~-----e-------------If~~~GE~ 54 (171)
T PRK13947 1 MKNIVLIGFMGTGKTTVGKKVATTLS--------FGFIDTDKEIEKMAGMTVS-----E-------------IFEKDGEV 54 (171)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHC--------CCEEECHHHHHHHCCCCHH-----H-------------HHHHHCHH
T ss_conf 98589979999988999999999979--------6989874999988299889-----9-------------99984899
Q ss_pred HHHHHHHHHHH---HCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEC------------CCCCCCCCCCCHHHHH
Q ss_conf 02799999997---30268999986878865589999999970996799832------------6788753211338887
Q gi|254780321|r 90 DFTYEVSRSLS---ACEGSLLVVDATQGVEAQTLANVYQAIDNNHEIITVLN------------KADLPSADPDRVKKQI 154 (606)
Q Consensus 90 DF~~EV~r~l~---a~dgaiLvVdA~~Gvq~QT~~~~~~A~~~~l~~I~viN------------KiD~~~A~~e~v~~ei 154 (606)
T Consensus 55 ~FR~~E~~~l~~~~~~~~--~VistGGG~-v~~~~n~~~l~~~g~--vi~L~~~~~~l~~Rl~~~~~RPll~~~~~~~~l 129 (171)
T PRK13947 55 RFRSLEKAAVRKAARLKN--LVIATGGGV-VLNPENIVQLRKNGV--LICLVARPEVILRRIKKKKDRPLLMVGNPEERI 129 (171)
T ss_pred HHHHHHHHHHHHHCCCCC--EEEECCCCC-CCCHHHHHHHHHCCE--EEEECCCHHHHHHHHHCCCCCCCCCCCCHHHHH
T ss_conf 999999999997403689--799789850-069999999996898--999739999999997289999979899879999
Q ss_pred HHHHH----HH--HHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 75553----22--32100011100223200678776321
Q gi|254780321|r 155 EETIG----IS--TEDALLVSAKTGEGIPLLLERIVQQL 187 (606)
Q Consensus 155 ~~~~g----~~--~~~ii~vSAktG~GV~~LLd~Iv~~i 187 (606)
T Consensus 130 ~~l~~~R~~~Y~~Ad~~I~~---~~~s~~ei~~~Ii~~~ 165 (171)
T PRK13947 130 RELLKEREPFYRFADFTIDT---SDMTIDEVAEEIIKAY 165 (171)
T ss_pred HHHHHHHHHHHHHCCEEEEC---CCCCHHHHHHHHHHHH
T ss_conf 99999999999976989889---9899999999999999