HHsearch alignment for GI: 254780321 and conserved domain: TIGR00231
>TIGR00231 small_GTP small GTP-binding protein domain; InterPro: IPR005225 Proteins with a small GTP-binding domain include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others . In some proteins the domain occurs more than once. Among them there is a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.; GO: 0005525 GTP binding.
Probab=99.45 E-value=3.7e-13 Score=107.79 Aligned_cols=166 Identities=30% Similarity=0.329 Sum_probs=128.6
Q ss_pred HCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCC--CCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCC
Q ss_conf 5317999801389877889999998298054444--31130586779871950523279999743788438999961787
Q gi|254780321|r 10 RIRNFSIVAHIDHGKSTLADRFIQHCRGLTEREM--SSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPG 87 (606)
Q Consensus 10 ~IRN~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~--~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPG 87 (606)
T Consensus 2 ~~~~~~~~g~~~~Gk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~-----~~-~~w-~~~~~~~d~~G 73 (186)
T TIGR00231 2 KDIKIGIVGDPNVGKSTLLNRLLGNKGSITESGPTDGTTRDYVTESIEEDGKTIT-G-----AT-FQW-GYKFNLLDTPG 73 (186)
T ss_pred CCEEEEEEECCCCCHHHHHHHHHHCCCCEEECCCCCCCCHHHHEEEEEECCEEEE-E-----EE-EEC-CEEEEEEECCC
T ss_conf 7505899734776604555445410120010232333200000011345580234-3-----43-102-42789862577
Q ss_pred ---CCHH-------HHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHH---
Q ss_conf ---3002-------799999997302689999868788655899999999709967998326788753211338887---
Q gi|254780321|r 88 ---HVDF-------TYEVSRSLSACEGSLLVVDATQGVEAQTLANVYQAIDNNHEIITVLNKADLPSADPDRVKKQI--- 154 (606)
Q Consensus 88 ---H~DF-------~~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~~~~l~~I~viNKiD~~~A~~e~v~~ei--- 154 (606)
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 153 (186)
T TIGR00231 74 LHRQEDYDALRRLYYPEVLSSLEVLDLVILVLDVEDGLEKDTKEIIHHADKYGVPILLVGNKIDLKDEKPGYFVDLKPHL 153 (186)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCEEEHHHHH
T ss_conf 11355554454332234454443333333222111001025677875322127416998513365546754010000345
Q ss_pred -HHHHHHHHHH-HHHHHHHCCCCCCHHHHHH
Q ss_conf -7555322321-0001110022320067877
Q gi|254780321|r 155 -EETIGISTED-ALLVSAKTGEGIPLLLERI 183 (606)
Q Consensus 155 -~~~~g~~~~~-ii~vSAktG~GV~~LLd~I 183 (606)
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (186)
T TIGR00231 154 ASLFAKLNGEPHFIPLSAETGKGIDSLFGLV 184 (186)
T ss_pred HHHHHHHCCCCCEEECCHHHHCCHHHHHHHH
T ss_conf 5555542366401111001110045566654