HHsearch alignment for GI: 254780321 and conserved domain: cd00157

>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.35  E-value=4.7e-11  Score=93.66  Aligned_cols=154  Identities=20%  Similarity=0.235  Sum_probs=96.1

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHHH
Q ss_conf             79998013898778899999982980544443113058677987195052327999974378843899996178730027
Q gi|254780321|r   13 NFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDFT   92 (606)
Q Consensus        13 N~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF~   92 (606)
T Consensus         2 Ki~llGd~~VGKTsli~r~~--~~~f~~~y-~~Ti~~-------------~~~~~~---~~~~~~~~l~iwDt~G~e~~~   62 (171)
T cd00157           2 KIVVVGDGAVGKTCLLISYT--TGKFPTEY-VPTVFD-------------NYSATV---TVDGKQVNLGLWDTAGQEEYD   62 (171)
T ss_pred             EEEEECCCCCCHHHHHHHHH--CCCCCCCC-CCEEEE-------------EEEEEE---EECCEEEEEEEEECCCCCCCC
T ss_conf             89999999966999999996--29999875-880346-------------668999---999999999999899871024


Q ss_pred             HHHHHHHHHCCEEEEEEECCCCCCHHHHHH-HHHHHH---CCCCEEEEECCCCCCCCCC---------CCH-HHHHHHHH
Q ss_conf             999999973026899998687886558999-999997---0996799832678875321---------133-88877555
Q gi|254780321|r   93 YEVSRSLSACEGSLLVVDATQGVEAQTLAN-VYQAID---NNHEIITVLNKADLPSADP---------DRV-KKQIEETI  158 (606)
Q Consensus        93 ~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~-~~~A~~---~~l~~I~viNKiD~~~A~~---------e~v-~~ei~~~~  158 (606)
T Consensus        63 ~~~~~~~~~a~~~ilvydit~~~Sf~~i~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~r~V~~~e~~~~a  142 (171)
T cd00157          63 RLRPLSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLA  142 (171)
T ss_pred             CCHHHHHHHCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHCCCCCCCHHHHHHHH
T ss_conf             13223444265899999689778899999999999998599986899998710012300022331147515899999999


Q ss_pred             -HHHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf             -322321000111002232006787763
Q gi|254780321|r  159 -GISTEDALLVSAKTGEGIPLLLERIVQ  185 (606)
Q Consensus       159 -g~~~~~ii~vSAktG~GV~~LLd~Iv~  185 (606)
T Consensus       143 ~~~~~~~f~E~SAk~g~nV~e~F~~l~r  170 (171)
T cd00157         143 KEIGAIGYMECSALTQEGVKEVFEEAIR  170 (171)
T ss_pred             HHCCCCEEEEECCCCCCCHHHHHHHHHC
T ss_conf             9849988999787899598999999966