HHsearch alignment for GI: 254780321 and conserved domain: cd00157
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.35 E-value=4.7e-11 Score=93.66 Aligned_cols=154 Identities=20% Similarity=0.235 Sum_probs=96.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHHH
Q ss_conf 79998013898778899999982980544443113058677987195052327999974378843899996178730027
Q gi|254780321|r 13 NFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDFT 92 (606)
Q Consensus 13 N~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF~ 92 (606)
T Consensus 2 Ki~llGd~~VGKTsli~r~~--~~~f~~~y-~~Ti~~-------------~~~~~~---~~~~~~~~l~iwDt~G~e~~~ 62 (171)
T cd00157 2 KIVVVGDGAVGKTCLLISYT--TGKFPTEY-VPTVFD-------------NYSATV---TVDGKQVNLGLWDTAGQEEYD 62 (171)
T ss_pred EEEEECCCCCCHHHHHHHHH--CCCCCCCC-CCEEEE-------------EEEEEE---EECCEEEEEEEEECCCCCCCC
T ss_conf 89999999966999999996--29999875-880346-------------668999---999999999999899871024
Q ss_pred HHHHHHHHHCCEEEEEEECCCCCCHHHHHH-HHHHHH---CCCCEEEEECCCCCCCCCC---------CCH-HHHHHHHH
Q ss_conf 999999973026899998687886558999-999997---0996799832678875321---------133-88877555
Q gi|254780321|r 93 YEVSRSLSACEGSLLVVDATQGVEAQTLAN-VYQAID---NNHEIITVLNKADLPSADP---------DRV-KKQIEETI 158 (606)
Q Consensus 93 ~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~-~~~A~~---~~l~~I~viNKiD~~~A~~---------e~v-~~ei~~~~ 158 (606)
T Consensus 63 ~~~~~~~~~a~~~ilvydit~~~Sf~~i~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~r~V~~~e~~~~a 142 (171)
T cd00157 63 RLRPLSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLA 142 (171)
T ss_pred CCHHHHHHHCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHCCCCCCCHHHHHHHH
T ss_conf 13223444265899999689778899999999999998599986899998710012300022331147515899999999
Q ss_pred -HHHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf -322321000111002232006787763
Q gi|254780321|r 159 -GISTEDALLVSAKTGEGIPLLLERIVQ 185 (606)
Q Consensus 159 -g~~~~~ii~vSAktG~GV~~LLd~Iv~ 185 (606)
T Consensus 143 ~~~~~~~f~E~SAk~g~nV~e~F~~l~r 170 (171)
T cd00157 143 KEIGAIGYMECSALTQEGVKEVFEEAIR 170 (171)
T ss_pred HHCCCCEEEEECCCCCCCHHHHHHHHHC
T ss_conf 9849988999787899598999999966