HHsearch alignment for GI: 254780321 and conserved domain: cd00876

>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.46  E-value=3.7e-12  Score=101.13  Aligned_cols=154  Identities=19%  Similarity=0.244  Sum_probs=101.8

Q ss_pred             EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHHHH
Q ss_conf             99980138987788999999829805444431130586779871950523279999743788438999961787300279
Q gi|254780321|r   14 FSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDFTY   93 (606)
Q Consensus        14 ~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF~~   93 (606)
T Consensus         2 i~ivG~~~vGKTsli~r~~~--~~f~~~~~-pTi----------~~~~---~~~~~---~~~~~~~l~i~Dt~g~~~~~~   62 (160)
T cd00876           2 VVVLGAGGVGKSAITIQFVK--GTFVEEYD-PTI----------EDSY---RKTIV---VDGETYTLDILDTAGQEEFSA   62 (160)
T ss_pred             EEEECCCCCCHHHHHHHHHH--CCCCCCCC-CCE----------EEEE---EEEEE---ECCEEEEEEEEECCCCHHHHH
T ss_conf             99999699679999999961--95998778-830----------0489---99999---766999999997999623557


Q ss_pred             HHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH-----HCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999997302689999868788655899999999-----70996799832678875321133888775553223210001
Q gi|254780321|r   94 EVSRSLSACEGSLLVVDATQGVEAQTLANVYQAI-----DNNHEIITVLNKADLPSADPDRVKKQIEETIGISTEDALLV  168 (606)
Q Consensus        94 EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~-----~~~l~~I~viNKiD~~~A~~e~v~~ei~~~~g~~~~~ii~v  168 (606)
T Consensus        63 ~~~~~~~~a~~~ilvfd~~~~~Sf~~i~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~-V~~~e~~~~a~~~~~~y~e~  141 (160)
T cd00876          63 MRDLYIRQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQ-VSKEEGKALAKEWGCPFIET  141 (160)
T ss_pred             HHHHHHHHCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHCCC-CCHHHHHHHHHHCCCEEEEE
T ss_conf             88999764368999732898789999999999999972878862999997456223078-99999999999849979998


Q ss_pred             HHHCCCCCCHHHHHHHHHH
Q ss_conf             1100223200678776321
Q gi|254780321|r  169 SAKTGEGIPLLLERIVQQL  187 (606)
Q Consensus       169 SAktG~GV~~LLd~Iv~~i  187 (606)
T Consensus       142 Sak~g~nV~e~F~~i~~~i  160 (160)
T cd00876         142 SAKDNINIDEVFKLLVREI  160 (160)
T ss_pred             CCCCCCCHHHHHHHHHHHC
T ss_conf             4798949899999999729