HHsearch alignment for GI: 254780321 and conserved domain: cd00882
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.55 E-value=2e-13 Score=109.67 Aligned_cols=151 Identities=25% Similarity=0.283 Sum_probs=102.2
Q ss_pred EECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCE-EEEEEEEEEEECCCCCEEEEEEEECCCCCHHHHH
Q ss_conf 980138987788999999829805444431130586779871950-5232799997437884389999617873002799
Q gi|254780321|r 16 IVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGIT-IKAQTVRLNYTSTDAKDYQLNLIDTPGHVDFTYE 94 (606)
Q Consensus 16 IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGIT-Ika~~~~~~~~~~~~~~y~iNlIDTPGH~DF~~E 94 (606)
T Consensus 1 vvG~~~~GKSsl~~~~~~--~~~~~~--------------~~~~~~~~~~~~~~~---~~~~~~~~~i~D~~g~~~~~~~ 61 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLG--GEFVPE--------------EYETTIIDFYSKTIE---VDGKKVKLQIWDTAGQERFRSL 61 (157)
T ss_pred CCCCCCCCHHHHHHHHHC--CCCCCC--------------CCCCCEEEEEEEEEE---ECCEEEEEEEEECCCCHHHHHH
T ss_conf 929499688999999971--988876--------------468715789999999---9999999999985895115678
Q ss_pred HHHHHHHCCEEEEEEECCCCCCHHHHHHHH--H---HHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999997302689999868788655899999--9---99709967998326788753211338887755532232100011
Q gi|254780321|r 95 VSRSLSACEGSLLVVDATQGVEAQTLANVY--Q---AIDNNHEIITVLNKADLPSADPDRVKKQIEETIGISTEDALLVS 169 (606)
Q Consensus 95 V~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~--~---A~~~~l~~I~viNKiD~~~A~~e~v~~ei~~~~g~~~~~ii~vS 169 (606)
T Consensus 62 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~S 141 (157)
T cd00882 62 RRLYYRGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETS 141 (157)
T ss_pred HHHHHHHCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHCCCCCHHHHHHHHHHHCCCEEEEEC
T ss_conf 99997535799999865888889999999999999752589849999853561540668899999999987898699984
Q ss_pred HHCCCCCCHHHHHHHH
Q ss_conf 1002232006787763
Q gi|254780321|r 170 AKTGEGIPLLLERIVQ 185 (606)
Q Consensus 170 AktG~GV~~LLd~Iv~ 185 (606)
T Consensus 142 a~~~~~i~~l~~~i~~ 157 (157)
T cd00882 142 AKTGENVEELFEELAE 157 (157)
T ss_pred CCCCCCHHHHHHHHHC
T ss_conf 7888399999999859