HHsearch alignment for GI: 254780321 and conserved domain: cd01870

>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.27  E-value=2.3e-10  Score=89.04  Aligned_cols=151  Identities=25%  Similarity=0.246  Sum_probs=97.2

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEE-EEEEEEECCCCCEEEEEEEECCCCCHH
Q ss_conf             7999801389877889999998298054444311305867798719505232-799997437884389999617873002
Q gi|254780321|r   13 NFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQ-TVRLNYTSTDAKDYQLNLIDTPGHVDF   91 (606)
Q Consensus        13 N~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~-~~~~~~~~~~~~~y~iNlIDTPGH~DF   91 (606)
T Consensus         3 Ki~liGd~~VGKTsli~r~~--~~~F~~~y---------------~pTi~~~~~~~i~---~~~~~v~l~iwDtaG~e~~   62 (175)
T cd01870           3 KLVIVGDGACGKTCLLIVFS--KDQFPEVY---------------VPTVFENYVADIE---VDGKQVELALWDTAGQEDY   62 (175)
T ss_pred             EEEEECCCCCCHHHHHHHHH--CCCCCCCC---------------CCCEEEEEEEEEE---ECCEEEEEEEEECCCCCCC
T ss_conf             99999989966999999997--09899984---------------7843689999999---9999999999977766132


Q ss_pred             HHHHHHHHHHCCEEEEEEECCCCCCHHHHH----HHHHHHH---CCCCEEEEECCCCCCCCCCC----------CHH-HH
Q ss_conf             799999997302689999868788655899----9999997---09967998326788753211----------338-88
Q gi|254780321|r   92 TYEVSRSLSACEGSLLVVDATQGVEAQTLA----NVYQAID---NNHEIITVLNKADLPSADPD----------RVK-KQ  153 (606)
Q Consensus        92 ~~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~----~~~~A~~---~~l~~I~viNKiD~~~A~~e----------~v~-~e  153 (606)
T Consensus        63 ~~~~~~~~~~a~~~ilvydi~~---~~Sf~~~~~~w~~~i~~~~~~~piilVgnK~DL~~~~~~~~~~~~~~~~~V~~~e  139 (175)
T cd01870          63 DRLRPLSYPDTDVILMCFSIDS---PDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEE  139 (175)
T ss_pred             CCCHHHHHCCCCEEEEEEECCC---HHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHCCCCCCHHH
T ss_conf             3240443148878999986598---7999999999999999729899899998724334332345666540255668999


Q ss_pred             HHHHHH-HHHHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf             775553-223210001110022320067877632
Q gi|254780321|r  154 IEETIG-ISTEDALLVSAKTGEGIPLLLERIVQQ  186 (606)
Q Consensus       154 i~~~~g-~~~~~ii~vSAktG~GV~~LLd~Iv~~  186 (606)
T Consensus       140 g~~~a~~~~~~~f~EtSAk~~~nV~e~Fe~~~k~  173 (175)
T cd01870         140 GRDMANKIGAFGYMECSAKTKEGVREVFEMATRA  173 (175)
T ss_pred             HHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHH
T ss_conf             9999997499789997689997989999999998