HHsearch alignment for GI: 254780321 and conserved domain: cd01870
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.27 E-value=2.3e-10 Score=89.04 Aligned_cols=151 Identities=25% Similarity=0.246 Sum_probs=97.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEE-EEEEEEECCCCCEEEEEEEECCCCCHH
Q ss_conf 7999801389877889999998298054444311305867798719505232-799997437884389999617873002
Q gi|254780321|r 13 NFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQ-TVRLNYTSTDAKDYQLNLIDTPGHVDF 91 (606)
Q Consensus 13 N~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~-~~~~~~~~~~~~~y~iNlIDTPGH~DF 91 (606)
T Consensus 3 Ki~liGd~~VGKTsli~r~~--~~~F~~~y---------------~pTi~~~~~~~i~---~~~~~v~l~iwDtaG~e~~ 62 (175)
T cd01870 3 KLVIVGDGACGKTCLLIVFS--KDQFPEVY---------------VPTVFENYVADIE---VDGKQVELALWDTAGQEDY 62 (175)
T ss_pred EEEEECCCCCCHHHHHHHHH--CCCCCCCC---------------CCCEEEEEEEEEE---ECCEEEEEEEEECCCCCCC
T ss_conf 99999989966999999997--09899984---------------7843689999999---9999999999977766132
Q ss_pred HHHHHHHHHHCCEEEEEEECCCCCCHHHHH----HHHHHHH---CCCCEEEEECCCCCCCCCCC----------CHH-HH
Q ss_conf 799999997302689999868788655899----9999997---09967998326788753211----------338-88
Q gi|254780321|r 92 TYEVSRSLSACEGSLLVVDATQGVEAQTLA----NVYQAID---NNHEIITVLNKADLPSADPD----------RVK-KQ 153 (606)
Q Consensus 92 ~~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~----~~~~A~~---~~l~~I~viNKiD~~~A~~e----------~v~-~e 153 (606)
T Consensus 63 ~~~~~~~~~~a~~~ilvydi~~---~~Sf~~~~~~w~~~i~~~~~~~piilVgnK~DL~~~~~~~~~~~~~~~~~V~~~e 139 (175)
T cd01870 63 DRLRPLSYPDTDVILMCFSIDS---PDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEE 139 (175)
T ss_pred CCCHHHHHCCCCEEEEEEECCC---HHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHCCCCCCHHH
T ss_conf 3240443148878999986598---7999999999999999729899899998724334332345666540255668999
Q ss_pred HHHHHH-HHHHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 775553-223210001110022320067877632
Q gi|254780321|r 154 IEETIG-ISTEDALLVSAKTGEGIPLLLERIVQQ 186 (606)
Q Consensus 154 i~~~~g-~~~~~ii~vSAktG~GV~~LLd~Iv~~ 186 (606)
T Consensus 140 g~~~a~~~~~~~f~EtSAk~~~nV~e~Fe~~~k~ 173 (175)
T cd01870 140 GRDMANKIGAFGYMECSAKTKEGVREVFEMATRA 173 (175)
T ss_pred HHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHH
T ss_conf 9999997499789997689997989999999998