HHsearch alignment for GI: 254780321 and conserved domain: cd01871
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.24 E-value=7e-10 Score=85.83 Aligned_cols=155 Identities=21% Similarity=0.209 Sum_probs=97.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHHHH
Q ss_conf 99980138987788999999829805444431130586779871950523279999743788438999961787300279
Q gi|254780321|r 14 FSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDFTY 93 (606)
Q Consensus 14 ~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF~~ 93 (606)
T Consensus 4 ivlvGd~~VGKTsli~r~~--~~~f~~~~---------------~~Ti~~-~~~~~i-~~~~~~v~l~iwDtaGqe~~~~ 64 (174)
T cd01871 4 CVVVGDGAVGKTCLLISYT--TNAFPGEY---------------IPTVFD-NYSANV-MVDGKPVNLGLWDTAGQEDYDR 64 (174)
T ss_pred EEEECCCCCCHHHHHHHHH--HCCCCCCC---------------CCEEEE-EEEEEE-EECCEEEEEEEECCCCCCCCHH
T ss_conf 9998999986999999997--39999986---------------883788-767999-9999999999986999724067
Q ss_pred HHHHHHHHCCEEEEEEECCCCCCHHHH-HHHHHHHH---CCCCEEEEECCCCCCCCCC--CC--------H-HHHHHHHH
Q ss_conf 999999730268999986878865589-99999997---0996799832678875321--13--------3-88877555
Q gi|254780321|r 94 EVSRSLSACEGSLLVVDATQGVEAQTL-ANVYQAID---NNHEIITVLNKADLPSADP--DR--------V-KKQIEETI 158 (606)
Q Consensus 94 EV~r~l~a~dgaiLvVdA~~Gvq~QT~-~~~~~A~~---~~l~~I~viNKiD~~~A~~--e~--------v-~~ei~~~~ 158 (606)
T Consensus 65 ~~~~~~~~a~~~ilvydi~~~~SF~~i~~~w~~~i~~~~~~~piiLVGnK~DL~~~~~~~~~~~~~~~~~vs~~eg~~~a 144 (174)
T cd01871 65 LRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMA 144 (174)
T ss_pred HHHHHHHHCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCHHHHHHHH
T ss_conf 88998740668999986798788999999999999985889997987473013100456778865146775899999999
Q ss_pred -HHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf -32232100011100223200678776321
Q gi|254780321|r 159 -GISTEDALLVSAKTGEGIPLLLERIVQQL 187 (606)
Q Consensus 159 -g~~~~~ii~vSAktG~GV~~LLd~Iv~~i 187 (606)
T Consensus 145 ~~~~~~~f~EtSAk~~~nV~e~F~~lir~i 174 (174)
T cd01871 145 KEIGAVKYLECSALTQKGLKTVFDEAIRAV 174 (174)
T ss_pred HHCCCCEEEECCCCCCCCHHHHHHHHHHHC
T ss_conf 875997899918788959799999999519