HHsearch alignment for GI: 254780321 and conserved domain: cd01879

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.55  E-value=6.5e-14  Score=112.88  Aligned_cols=147  Identities=24%  Similarity=0.360  Sum_probs=93.4

Q ss_pred             EECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHH---H
Q ss_conf             9801389877889999998298054444311305867798719505232799997437884389999617873002---7
Q gi|254780321|r   16 IVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDF---T   92 (606)
Q Consensus        16 IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF---~   92 (606)
T Consensus         1 ivG~pNvGKSTL~N~L~---g~---~~---~vs~------~pgtTrd~~~~~~~-----~~~~~~~lvDtpGi~~~~~~~   60 (158)
T cd01879           1 LVGNPNVGKTTLFNALT---GA---RQ---KVGN------WPGVTVEKKEGRFK-----LGGKEIEIVDLPGTYSLSPYS   60 (158)
T ss_pred             CCCCCCCCHHHHHHHHH---CC---CC---EECC------CCCCEEEEEEEEEE-----ECCEEEEEEECCCCCCCCCCC
T ss_conf             97989888999999995---99---86---4617------89827634788996-----299379999798741256413


Q ss_pred             H--HHHHHH---HHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCC-HHHHHHHHHHHHHHHHH
Q ss_conf             9--999999---73026899998687886558999999997099679983267887532113-38887755532232100
Q gi|254780321|r   93 Y--EVSRSL---SACEGSLLVVDATQGVEAQTLANVYQAIDNNHEIITVLNKADLPSADPDR-VKKQIEETIGISTEDAL  166 (606)
Q Consensus        93 ~--EV~r~l---~a~dgaiLvVdA~~Gvq~QT~~~~~~A~~~~l~~I~viNKiD~~~A~~e~-v~~ei~~~~g~~~~~ii  166 (606)
T Consensus        61 ~~e~i~~~~~~~~~~d~vl~vvD~~~-~~~-~l~~~~~l~~~~~p~ivV~NK~D~~~~~~~~~~~~~l~~~~~~---~ii  135 (158)
T cd01879          61 EDEKVARDFLLGEKPDLIVNVVDATN-LER-NLYLTLQLLELGLPVVVALNMIDEAEKRGIKIDLDKLSELLGV---PVV  135 (158)
T ss_pred             HHHHHHHHHHHHCCCCCEEEEEECCH-HHH-HHHHHHHHHHCCCCEEEEEEHHHHHHHCCCHHHHHHHHHHCCC---CEE
T ss_conf             56789999998517871799977740-677-6899999986599889994027765522546679999987199---489


Q ss_pred             HHHHHCCCCCCHHHHHHHHHH
Q ss_conf             011100223200678776321
Q gi|254780321|r  167 LVSAKTGEGIPLLLERIVQQL  187 (606)
Q Consensus       167 ~vSAktG~GV~~LLd~Iv~~i  187 (606)
T Consensus       136 ~iSA~~g~Gi~~L~~~i~el~  156 (158)
T cd01879         136 PTSARKGEGIDELKDAIAELA  156 (158)
T ss_pred             EEECCCCCCHHHHHHHHHHHH
T ss_conf             998778979999999999986