HHsearch alignment for GI: 254780321 and conserved domain: cd01891
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=100.00 E-value=0 Score=399.64 Aligned_cols=176 Identities=42% Similarity=0.698 Sum_probs=161.7
Q ss_pred HCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCC-CCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCC
Q ss_conf 531799980138987788999999829805444-4311305867798719505232799997437884389999617873
Q gi|254780321|r 10 RIRNFSIVAHIDHGKSTLADRFIQHCRGLTERE-MSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGH 88 (606)
Q Consensus 10 ~IRN~~IiaHvDhGKTTL~d~lL~~tg~i~~~~-~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH 88 (606)
T Consensus 1 nIRNv~iiGHvd~GKTTL~~~Ll~~tg~~~~~~~~~~~~~D~~~~E~ergiTI~~~~~~~~~-----~~~~~n~IDtPGH 75 (194)
T cd01891 1 DIRNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTY-----KDTKINIVDTPGH 75 (194)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEECCCHHHHHCCCCEEEEEEEEEE-----CCEEEEEEECCCC
T ss_conf 98789999068987999999999974876304652168614758888728763345899998-----9988999989984
Q ss_pred CHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHH---HHHHH--
Q ss_conf 0027999999973026899998687886558999999997099679983267887532113388877555---32232--
Q gi|254780321|r 89 VDFTYEVSRSLSACEGSLLVVDATQGVEAQTLANVYQAIDNNHEIITVLNKADLPSADPDRVKKQIEETI---GISTE-- 163 (606)
Q Consensus 89 ~DF~~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~~~~l~~I~viNKiD~~~A~~e~v~~ei~~~~---g~~~~-- 163 (606)
T Consensus 76 ~dF~~~~~~~~~~~D~ailVVdA~~Gv~~QT~~~l~~a~~~~~~~iv~iNK~D~~~a~~~~v~~ei~~~~~~~~~~~~~~ 155 (194)
T cd01891 76 ADFGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQL 155 (194)
T ss_pred HHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 77777898776434467898653789758999999999872997499885645898889999999999998639993335
Q ss_pred --HHHHHHHHCC----------CCCCHHHHHHHHHHHCC
Q ss_conf --1000111002----------23200678776321000
Q gi|254780321|r 164 --DALLVSAKTG----------EGIPLLLERIVQQLPSP 190 (606)
Q Consensus 164 --~ii~vSAktG----------~GV~~LLd~Iv~~iP~P 190 (606)
T Consensus 156 ~~pii~~SA~~G~~~d~~~~~~~~~~~ll~ai~~~iP~P 194 (194)
T cd01891 156 DFPVLYASAKNGWASLNLEDPSEDLEPLFDTIIEHVPAP 194 (194)
T ss_pred CCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCC
T ss_conf 885787256553357788656465999999999658898