HHsearch alignment for GI: 254780321 and conserved domain: cd01891

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=100.00  E-value=0  Score=399.64  Aligned_cols=176  Identities=42%  Similarity=0.698  Sum_probs=161.7

Q ss_pred             HCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCC-CCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCC
Q ss_conf             531799980138987788999999829805444-4311305867798719505232799997437884389999617873
Q gi|254780321|r   10 RIRNFSIVAHIDHGKSTLADRFIQHCRGLTERE-MSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGH   88 (606)
Q Consensus        10 ~IRN~~IiaHvDhGKTTL~d~lL~~tg~i~~~~-~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH   88 (606)
T Consensus         1 nIRNv~iiGHvd~GKTTL~~~Ll~~tg~~~~~~~~~~~~~D~~~~E~ergiTI~~~~~~~~~-----~~~~~n~IDtPGH   75 (194)
T cd01891           1 DIRNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTY-----KDTKINIVDTPGH   75 (194)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEECCCHHHHHCCCCEEEEEEEEEE-----CCEEEEEEECCCC
T ss_conf             98789999068987999999999974876304652168614758888728763345899998-----9988999989984


Q ss_pred             CHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHH---HHHHH--
Q ss_conf             0027999999973026899998687886558999999997099679983267887532113388877555---32232--
Q gi|254780321|r   89 VDFTYEVSRSLSACEGSLLVVDATQGVEAQTLANVYQAIDNNHEIITVLNKADLPSADPDRVKKQIEETI---GISTE--  163 (606)
Q Consensus        89 ~DF~~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~~~~l~~I~viNKiD~~~A~~e~v~~ei~~~~---g~~~~--  163 (606)
T Consensus        76 ~dF~~~~~~~~~~~D~ailVVdA~~Gv~~QT~~~l~~a~~~~~~~iv~iNK~D~~~a~~~~v~~ei~~~~~~~~~~~~~~  155 (194)
T cd01891          76 ADFGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQL  155 (194)
T ss_pred             HHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCC
T ss_conf             77777898776434467898653789758999999999872997499885645898889999999999998639993335


Q ss_pred             --HHHHHHHHCC----------CCCCHHHHHHHHHHHCC
Q ss_conf             --1000111002----------23200678776321000
Q gi|254780321|r  164 --DALLVSAKTG----------EGIPLLLERIVQQLPSP  190 (606)
Q Consensus       164 --~ii~vSAktG----------~GV~~LLd~Iv~~iP~P  190 (606)
T Consensus       156 ~~pii~~SA~~G~~~d~~~~~~~~~~~ll~ai~~~iP~P  194 (194)
T cd01891         156 DFPVLYASAKNGWASLNLEDPSEDLEPLFDTIIEHVPAP  194 (194)
T ss_pred             CCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCC
T ss_conf             885787256553357788656465999999999658898