HHsearch alignment for GI: 254780321 and conserved domain: cd01892
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.31 E-value=1.7e-10 Score=89.92 Aligned_cols=159 Identities=21% Similarity=0.259 Sum_probs=103.7
Q ss_pred HHCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCC
Q ss_conf 25317999801389877889999998298054444311305867798719505232799997437884389999617873
Q gi|254780321|r 9 SRIRNFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGH 88 (606)
Q Consensus 9 ~~IRN~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH 88 (606)
T Consensus 2 r~vfk~~VlG~~~VGKTsLi~rf~~--~~f~~~~y~~T----------i~~~~~~k~v~-----v~g~~~~L~i~Dt~g~ 64 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLG--RSFSLNAYSPT----------IKPRYAVNTVE-----VYGQEKYLILREVGED 64 (169)
T ss_pred CEEEEEEEECCCCCCHHHHHHHHHC--CCCCCCCCCCC----------CCCEEEEEEEE-----ECCEEEEEEEEECCCC
T ss_conf 5089999999999889999999964--99986665675----------46618999999-----8999999999855653
Q ss_pred CHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHH---HHHHHH--HCCCCEEEEECCCCCCCCCCCCHHHHHHHH---HHH
Q ss_conf 002799999997302689999868788655899---999999--709967998326788753211338887755---532
Q gi|254780321|r 89 VDFTYEVSRSLSACEGSLLVVDATQGVEAQTLA---NVYQAI--DNNHEIITVLNKADLPSADPDRVKKQIEET---IGI 160 (606)
Q Consensus 89 ~DF~~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~---~~~~A~--~~~l~~I~viNKiD~~~A~~e~v~~ei~~~---~g~ 160 (606)
T Consensus 65 e~~~~l~~~~~~~ad~~ilVyDit~~---~SF~~i~~~~~~~~~~~~iP~vlVgNK~DL~~~rq-V~~~e~~~~a~~~~~ 140 (169)
T cd01892 65 EVAILLNDAELAACDVACLVYDSSDP---KSFSYCAEVYKKYFMLGEIPCLFVAAKADLDEQQQ-RYEVQPDEFCRKLGL 140 (169)
T ss_pred HHHHHHHHHHHCCCCEEEEEEECCCH---HHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCC-CCHHHHHHHHHHCCC
T ss_conf 23556658875469889999979987---89999999999700568981899988655420375-467769999998399
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHCC
Q ss_conf 232100011100223200678776321000
Q gi|254780321|r 161 STEDALLVSAKTGEGIPLLLERIVQQLPSP 190 (606)
Q Consensus 161 ~~~~ii~vSAktG~GV~~LLd~Iv~~iP~P 190 (606)
T Consensus 141 ~--~~~e~SAktg~nv~~~F~~la~~a~~p 168 (169)
T cd01892 141 P--PPLHFSSKLGDSSNELFTKLATAAQYP 168 (169)
T ss_pred C--CCEEEEEECCCCHHHHHHHHHHHHHCC
T ss_conf 9--666998327989899999999997678