HHsearch alignment for GI: 254780321 and conserved domain: cd01892

>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.31  E-value=1.7e-10  Score=89.92  Aligned_cols=159  Identities=21%  Similarity=0.259  Sum_probs=103.7

Q ss_pred             HHCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCC
Q ss_conf             25317999801389877889999998298054444311305867798719505232799997437884389999617873
Q gi|254780321|r    9 SRIRNFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGH   88 (606)
Q Consensus         9 ~~IRN~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH   88 (606)
T Consensus         2 r~vfk~~VlG~~~VGKTsLi~rf~~--~~f~~~~y~~T----------i~~~~~~k~v~-----v~g~~~~L~i~Dt~g~   64 (169)
T cd01892           2 RNVFLCFVLGAKGSGKSALLRAFLG--RSFSLNAYSPT----------IKPRYAVNTVE-----VYGQEKYLILREVGED   64 (169)
T ss_pred             CEEEEEEEECCCCCCHHHHHHHHHC--CCCCCCCCCCC----------CCCEEEEEEEE-----ECCEEEEEEEEECCCC
T ss_conf             5089999999999889999999964--99986665675----------46618999999-----8999999999855653


Q ss_pred             CHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHH---HHHHHH--HCCCCEEEEECCCCCCCCCCCCHHHHHHHH---HHH
Q ss_conf             002799999997302689999868788655899---999999--709967998326788753211338887755---532
Q gi|254780321|r   89 VDFTYEVSRSLSACEGSLLVVDATQGVEAQTLA---NVYQAI--DNNHEIITVLNKADLPSADPDRVKKQIEET---IGI  160 (606)
Q Consensus        89 ~DF~~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~---~~~~A~--~~~l~~I~viNKiD~~~A~~e~v~~ei~~~---~g~  160 (606)
T Consensus        65 e~~~~l~~~~~~~ad~~ilVyDit~~---~SF~~i~~~~~~~~~~~~iP~vlVgNK~DL~~~rq-V~~~e~~~~a~~~~~  140 (169)
T cd01892          65 EVAILLNDAELAACDVACLVYDSSDP---KSFSYCAEVYKKYFMLGEIPCLFVAAKADLDEQQQ-RYEVQPDEFCRKLGL  140 (169)
T ss_pred             HHHHHHHHHHHCCCCEEEEEEECCCH---HHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCC-CCHHHHHHHHHHCCC
T ss_conf             23556658875469889999979987---89999999999700568981899988655420375-467769999998399


Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHCC
Q ss_conf             232100011100223200678776321000
Q gi|254780321|r  161 STEDALLVSAKTGEGIPLLLERIVQQLPSP  190 (606)
Q Consensus       161 ~~~~ii~vSAktG~GV~~LLd~Iv~~iP~P  190 (606)
T Consensus       141 ~--~~~e~SAktg~nv~~~F~~la~~a~~p  168 (169)
T cd01892         141 P--PPLHFSSKLGDSSNELFTKLATAAQYP  168 (169)
T ss_pred             C--CCEEEEEECCCCHHHHHHHHHHHHHCC
T ss_conf             9--666998327989899999999997678