HHsearch alignment for GI: 254780321 and conserved domain: cd01893
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.43 E-value=1.2e-11 Score=97.66 Aligned_cols=157 Identities=17% Similarity=0.185 Sum_probs=101.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHHHH
Q ss_conf 99980138987788999999829805444431130586779871950523279999743788438999961787300279
Q gi|254780321|r 14 FSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDFTY 93 (606)
Q Consensus 14 ~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF~~ 93 (606)
T Consensus 3 iv~vGd~~VGKTsli~r~~--~~~F~~~~--~~t~~--------~~~~-----~~~---~~~~~v~l~i~DtaG~e~~~~ 62 (166)
T cd01893 3 IVLIGDEGVGKSSLIMSLV--SEEFPENV--PRVLP--------EITI-----PAD---VTPERVPTTIVDTSSRPQDRA 62 (166)
T ss_pred EEEECCCCCCHHHHHHHHH--HCCCCCCC--CCCCC--------CEEE-----EEE---ECCEEEEEEEEECCCCCCCCH
T ss_conf 9999999989999999998--49788877--76345--------6899-----999---889099999998998723024
Q ss_pred HHHHHHHHCCEEEEEEECCCCCCHHHHHHHHH----HHHCCCCEEEEECCCCCCCCCCCCHHHHH-HHHH-HHH-HHHHH
Q ss_conf 99999973026899998687886558999999----99709967998326788753211338887-7555-322-32100
Q gi|254780321|r 94 EVSRSLSACEGSLLVVDATQGVEAQTLANVYQ----AIDNNHEIITVLNKADLPSADPDRVKKQI-EETI-GIS-TEDAL 166 (606)
Q Consensus 94 EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~----A~~~~l~~I~viNKiD~~~A~~e~v~~ei-~~~~-g~~-~~~ii 166 (606)
T Consensus 63 ~~~~~~~~a~~~ilvydit~~~Sf~~i~~~w~~~i~~~~~~~piilvGNK~DL~~~r~~~~~e~~~~~~~~~~~~~~~~~ 142 (166)
T cd01893 63 NLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCV 142 (166)
T ss_pred HHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEE
T ss_conf 57987368988999970898778999999999999986899968999988654002503358899999999730748899
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHCC
Q ss_conf 011100223200678776321000
Q gi|254780321|r 167 LVSAKTGEGIPLLLERIVQQLPSP 190 (606)
Q Consensus 167 ~vSAktG~GV~~LLd~Iv~~iP~P 190 (606)
T Consensus 143 EtSAktg~nV~e~F~~~~k~~l~p 166 (166)
T cd01893 143 ECSAKTLINVSEVFYYAQKAVLHP 166 (166)
T ss_pred EECCCCCCCHHHHHHHHHHHHHCC
T ss_conf 906588919899999999998098