HHsearch alignment for GI: 254780321 and conserved domain: cd01897
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.59 E-value=6.6e-14 Score=112.84 Aligned_cols=152 Identities=24% Similarity=0.329 Sum_probs=95.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHHH
Q ss_conf 79998013898778899999982980544443113058677987195052327999974378843899996178730027
Q gi|254780321|r 13 NFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDFT 92 (606)
Q Consensus 13 N~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF~ 92 (606)
T Consensus 2 ~VaivG~pNvGKStL~N~L---~g~--~~~----v~~~------p~TTr~~~~~~~~-----~~~~~~~liDTpGi~~~~ 61 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKL---TRA--KPE----VAPY------PFTTKSLFVGHFD-----YKYLRWQVIDTPGLLDRP 61 (168)
T ss_pred EEEEECCCCCCHHHHHHHH---HCC--CCE----ECCC------CCCCCCCEEEEEE-----ECCCEEEEECCCCCCCCC
T ss_conf 7999889998899999999---589--860----2375------8723574368999-----837276872488655674
Q ss_pred ----HHHHH----HHH-HCCEEEEEEECCCCCC--HHHHHHHHHH---HHCCCCEEEEECCCCCCCCCCCCHHHHHHHHH
Q ss_conf ----99999----997-3026899998687886--5589999999---97099679983267887532113388877555
Q gi|254780321|r 93 ----YEVSR----SLS-ACEGSLLVVDATQGVE--AQTLANVYQA---IDNNHEIITVLNKADLPSADPDRVKKQIEETI 158 (606)
Q Consensus 93 ----~EV~r----~l~-a~dgaiLvVdA~~Gvq--~QT~~~~~~A---~~~~l~~I~viNKiD~~~A~~e~v~~ei~~~~ 158 (606)
T Consensus 62 ~~~~~~ie~~~~~~l~~~~d~il~viD~~~~~~~~~~~~~~l~~~i~~~~~~~p~i~v~NK~Dl~~~--~~-~~~~~~~~ 138 (168)
T cd01897 62 LEERNTIEMQAITALAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDLLTF--ED-LSEIEEEE 138 (168)
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCC--CC-HHHHHHHH
T ss_conf 7888899999999998357768999968876784899999999987765258887999947534581--00-79999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 32232100011100223200678776321
Q gi|254780321|r 159 GISTEDALLVSAKTGEGIPLLLERIVQQL 187 (606)
Q Consensus 159 g~~~~~ii~vSAktG~GV~~LLd~Iv~~i 187 (606)
T Consensus 139 ~~~~~~vi~ISA~~g~Gi~~L~~~i~ell 167 (168)
T cd01897 139 ELEGEEVLKISTLTEEGVDEVKNKACELL 167 (168)
T ss_pred HCCCCCEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 70899889998158969999999999963