HHsearch alignment for GI: 254780321 and conserved domain: cd04102
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=98.75 E-value=8.1e-07 Score=65.26 Aligned_cols=156 Identities=18% Similarity=0.254 Sum_probs=95.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEE--CCCCCEEEEEEEECCCCCHH
Q ss_conf 9998013898778899999982980544443113058677987195052327999974--37884389999617873002
Q gi|254780321|r 14 FSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYT--STDAKDYQLNLIDTPGHVDF 91 (606)
Q Consensus 14 ~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~--~~~~~~y~iNlIDTPGH~DF 91 (606)
T Consensus 3 IlllGDsgVGKTSL~~~~~--~~~f~~~~-~~Ti----------G~~v~~k~--~~~~~~~~~~k~~~l~lWDtaGqery 67 (202)
T cd04102 3 VLVVGDSGVGKSSLVHLIC--KNQVLGRP-SWTV----------GCSVDVKH--HTYKEGTPEEKTFFVELWDVGGSESV 67 (202)
T ss_pred EEEECCCCCCHHHHHHHHH--CCCCCCCC-CCCE----------EEEEEEEE--EEECCCCCCCCEEEEEEEECCCCHHH
T ss_conf 9999999989999999998--39888888-8850----------36789999--99337876783899999989987757
Q ss_pred HHHHHHHHHHCCEEEEEEECCCCCCHHHHHHH--HHHH------------------------HCCCCEEEEECCCCCCCC
Q ss_conf 79999999730268999986878865589999--9999------------------------709967998326788753
Q gi|254780321|r 92 TYEVSRSLSACEGSLLVVDATQGVEAQTLANV--YQAI------------------------DNNHEIITVLNKADLPSA 145 (606)
Q Consensus 92 ~~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~--~~A~------------------------~~~l~~I~viNKiD~~~A 145 (606)
T Consensus 68 ~sl~~~yYr~a~gvILVyDvTn---r~SF~nL~~Wl~Eil~~~~~~~~~~~~~~~~~~~~~~~~~vPilvVGtK~D~~~~ 144 (202)
T cd04102 68 KSTRAVFYNQVNGIILVHDLTN---RKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPE 144 (202)
T ss_pred HHHHHHHHCCCCEEEEEEECCC---HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECHHHCCC
T ss_conf 7678997588989999998949---8999869999999975367666545566655533346789758999760652434
Q ss_pred CC------C----CHHHH--HHHH-HHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 21------1----33888--7755-532232100011100223200678776321
Q gi|254780321|r 146 DP------D----RVKKQ--IEET-IGISTEDALLVSAKTGEGIPLLLERIVQQL 187 (606)
Q Consensus 146 ~~------e----~v~~e--i~~~-~g~~~~~ii~vSAktG~GV~~LLd~Iv~~i 187 (606)
T Consensus 145 r~~~~~~~~~~~~~ia~q~~~eei~~~c~~~~~~~~~~~~~~kl~~ff~~vie~~ 199 (202)
T cd04102 145 KESSGNLVLTARGFVAEQGNAEEINLNCTNGRLLAAGSSDAVKLSRFFDKVIEKR 199 (202)
T ss_pred CCCCCCHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 3555423555302577751667888745684400346755168999999998888