HHsearch alignment for GI: 254780321 and conserved domain: cd04104

>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=98.05  E-value=0.0001  Score=51.14  Aligned_cols=161  Identities=19%  Similarity=0.246  Sum_probs=93.1

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCC--H
Q ss_conf             79998013898778899999982980544443113058677987195052327999974378843899996178730--0
Q gi|254780321|r   13 NFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHV--D   90 (606)
Q Consensus        13 N~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~--D   90 (606)
T Consensus         3 ~iaVtGesGaGKSSfINAlR---Gl~~~d~~aA~t----------Gv~eTT-~~~~~Y~~p~~pn--v~lwDlPG~Gt~~   66 (197)
T cd04104           3 NIAVTGESGAGKSSFINALR---GVGHEEEGAAPT----------GVVETT-MKRTPYPHPKFPN--VTLWDLPGIGSTA   66 (197)
T ss_pred             EEEEECCCCCCHHHHHHHHH---CCCCCCCCCCCC----------CCCCCC-CCCEECCCCCCCC--CEEECCCCCCCCC
T ss_conf             79995589986899999986---889887775888----------887467-7862047999998--7697289999876


Q ss_pred             HHHHHH---HHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCC----------CCCCHHHHHHHH
Q ss_conf             279999---9997302689999868788655899999999709967998326788753----------211338887755
Q gi|254780321|r   91 FTYEVS---RSLSACEGSLLVVDATQGVEAQTLANVYQAIDNNHEIITVLNKADLPSA----------DPDRVKKQIEET  157 (606)
Q Consensus        91 F~~EV~---r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~~~~l~~I~viNKiD~~~A----------~~e~v~~ei~~~  157 (606)
T Consensus        67 f~~~~Yl~~~~~~~yD~fi-iiss-~rf~~nd~~la~~i~~~gK~fyfVRsK~D~dl~n~~~~~p~~f~~e~~L~~IR~~  144 (197)
T cd04104          67 FPPDDYLEEMKFSEYDFFI-IISS-TRFSSNDVKLAKAIQCMGKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDN  144 (197)
T ss_pred             CCHHHHHHHCCCCCCCEEE-EEEC-CCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHCCCCCCCHHHHHHHHHHH
T ss_conf             5989999865855457899-9838-8641426999999998099289998612140005663787665999999999999


Q ss_pred             H-------HHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHCCC
Q ss_conf             5-------322321000111002--232006787763210001
Q gi|254780321|r  158 I-------GISTEDALLVSAKTG--EGIPLLLERIVQQLPSPT  191 (606)
Q Consensus       158 ~-------g~~~~~ii~vSAktG--~GV~~LLd~Iv~~iP~P~  191 (606)
T Consensus       145 c~~~L~~~gv~~p~VFLvS~~~~~~yDFp~L~~tl~~~Lp~~k  187 (197)
T cd04104         145 CLENLQEAGVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAHK  187 (197)
T ss_pred             HHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf             9999998699999989993798220776899999999808988