HHsearch alignment for GI: 254780321 and conserved domain: cd04104
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=98.05 E-value=0.0001 Score=51.14 Aligned_cols=161 Identities=19% Similarity=0.246 Sum_probs=93.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCC--H
Q ss_conf 79998013898778899999982980544443113058677987195052327999974378843899996178730--0
Q gi|254780321|r 13 NFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHV--D 90 (606)
Q Consensus 13 N~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~--D 90 (606)
T Consensus 3 ~iaVtGesGaGKSSfINAlR---Gl~~~d~~aA~t----------Gv~eTT-~~~~~Y~~p~~pn--v~lwDlPG~Gt~~ 66 (197)
T cd04104 3 NIAVTGESGAGKSSFINALR---GVGHEEEGAAPT----------GVVETT-MKRTPYPHPKFPN--VTLWDLPGIGSTA 66 (197)
T ss_pred EEEEECCCCCCHHHHHHHHH---CCCCCCCCCCCC----------CCCCCC-CCCEECCCCCCCC--CEEECCCCCCCCC
T ss_conf 79995589986899999986---889887775888----------887467-7862047999998--7697289999876
Q ss_pred HHHHHH---HHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCC----------CCCCHHHHHHHH
Q ss_conf 279999---9997302689999868788655899999999709967998326788753----------211338887755
Q gi|254780321|r 91 FTYEVS---RSLSACEGSLLVVDATQGVEAQTLANVYQAIDNNHEIITVLNKADLPSA----------DPDRVKKQIEET 157 (606)
Q Consensus 91 F~~EV~---r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~~~~l~~I~viNKiD~~~A----------~~e~v~~ei~~~ 157 (606)
T Consensus 67 f~~~~Yl~~~~~~~yD~fi-iiss-~rf~~nd~~la~~i~~~gK~fyfVRsK~D~dl~n~~~~~p~~f~~e~~L~~IR~~ 144 (197)
T cd04104 67 FPPDDYLEEMKFSEYDFFI-IISS-TRFSSNDVKLAKAIQCMGKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDN 144 (197)
T ss_pred CCHHHHHHHCCCCCCCEEE-EEEC-CCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHCCCCCCCHHHHHHHHHHH
T ss_conf 5989999865855457899-9838-8641426999999998099289998612140005663787665999999999999
Q ss_pred H-------HHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHCCC
Q ss_conf 5-------322321000111002--232006787763210001
Q gi|254780321|r 158 I-------GISTEDALLVSAKTG--EGIPLLLERIVQQLPSPT 191 (606)
Q Consensus 158 ~-------g~~~~~ii~vSAktG--~GV~~LLd~Iv~~iP~P~ 191 (606)
T Consensus 145 c~~~L~~~gv~~p~VFLvS~~~~~~yDFp~L~~tl~~~Lp~~k 187 (197)
T cd04104 145 CLENLQEAGVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAHK 187 (197)
T ss_pred HHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 9999998699999989993798220776899999999808988