>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

Probab=99.38 E-value=2.4e-11 Score=95.68 Aligned_cols=156 Identities=19% Similarity=0.247 Sum_probs=99.7 Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHHHH Q ss_conf 99980138987788999999829805444431130586779871950523279999743788438999961787300279 Q gi|254780321|r 14 FSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDFTY 93 (606) Q Consensus 14 ~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF~~ 93 (606) T Consensus 3 ivlvGd~~VGKTsli~r~~--~~~f~~~y-~~Ti----------g~d~~~k~~~-----v~~~~~~l~iwDtaGqe~f~~ 64 (170) T cd04108 3 VIVVGDLSVGKTCLINRFC--KDVFDKNY-KATI----------GVDFEMERFE-----ILGVPFSLQLWDTAGQERFKC 64 (170) T ss_pred EEEECCCCCCHHHHHHHHH--CCCCCCCC-CCCC----------CEEEEEEEEE-----ECCEEEEEEEEECCCCCCCCC T ss_conf 9999989989899999996--39889972-5634----------5058999999-----999999999998999974664 Q ss_pred HHHHHHHHCCEEEEEEECCCCCCHHHHHHHHH-HHHC-C---CCEEEEECCCCCCCCCCCCH-HHHHHHHHHHHHHHHHH Q ss_conf 99999973026899998687886558999999-9970-9---96799832678875321133-88877555322321000 Q gi|254780321|r 94 EVSRSLSACEGSLLVVDATQGVEAQTLANVYQ-AIDN-N---HEIITVLNKADLPSADPDRV-KKQIEETIGISTEDALL 167 (606) Q Consensus 94 EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~-A~~~-~---l~~I~viNKiD~~~A~~e~v-~~ei~~~~g~~~~~ii~ 167 (606) T Consensus 65 l~~~y~r~a~~~ilvyDvt~~~Sf~~~~~w~~~~~~~~~~~~~~i~LvgNK~DL~~~~~~~~~~~~~~~~a~~~~~~~~E 144 (170) T cd04108 65 IASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWS 144 (170) T ss_pred CHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCEEEEEHHHHHHHHHHCCCEEEE T ss_conf 43777327875899997898789999999999999850899982999998413798755764489999999877987999 Q ss_pred HHHHCCCCCCHHHHHHHHHH Q ss_conf 11100223200678776321 Q gi|254780321|r 168 VSAKTGEGIPLLLERIVQQL 187 (606) Q Consensus 168 vSAktG~GV~~LLd~Iv~~i 187 (606) T Consensus 145 ~SAk~g~nV~e~F~~ia~~~ 164 (170) T cd04108 145 VSALSGENVREFFFRVAALT 164 (170) T ss_pred ECCCCCCCHHHHHHHHHHHH T ss_conf 85578818799999999999

HHsearch alignment for GI: 254780321 and conserved domain: cd04108