HHsearch alignment for GI: 254780321 and conserved domain: cd04114
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.35 E-value=3.5e-11 Score=94.51 Aligned_cols=158 Identities=19% Similarity=0.210 Sum_probs=100.6
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCH
Q ss_conf 31799980138987788999999829805444431130586779871950523279999743788438999961787300
Q gi|254780321|r 11 IRNFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVD 90 (606)
Q Consensus 11 IRN~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~D 90 (606)
T Consensus 7 ~~KivllGd~~VGKTsli~r~~--~~~f~~~~~-~T----------ig~d~~~k--~i~---~~~~~v~l~iwDtaG~e~ 68 (169)
T cd04114 7 LFKIVLIGNAGVGKTCLVRRFT--QGLFPPGQG-AT----------IGVDFMIK--TVE---IKGEKIKLQIWDTAGQER 68 (169)
T ss_pred EEEEEEECCCCCCHHHHHHHHH--HCCCCCCCC-CC----------CCEEEEEE--EEE---ECCEEEEEEEEECCCCCC
T ss_conf 9899999989979999999998--598999867-74----------12478999--999---999999999998999844
Q ss_pred HHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH-HC---CCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 2799999997302689999868788655899999999-70---9967998326788753211338887755532232100
Q gi|254780321|r 91 FTYEVSRSLSACEGSLLVVDATQGVEAQTLANVYQAI-DN---NHEIITVLNKADLPSADPDRVKKQIEETIGISTEDAL 166 (606)
Q Consensus 91 F~~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~-~~---~l~~I~viNKiD~~~A~~e~v~~ei~~~~g~~~~~ii 166 (606)
T Consensus 69 ~~~l~~~~~~~a~~~ilvydvt~~~Sf~~l~~w~~~i~~~~~~~~~~ilVGNK~DL~~~r~-v~~~~~~~~a~~~~~~~~ 147 (169)
T cd04114 69 FRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERRE-VSQQRAEEFSDAQDMYYL 147 (169)
T ss_pred CCCCHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHCCC-CCHHHHHHHHHHCCCEEE
T ss_conf 4515577742366459981489888999999999999986898863897311343454178-899999999998899999
Q ss_pred HHHHHCCCCCCHHHHHHHHHH
Q ss_conf 011100223200678776321
Q gi|254780321|r 167 LVSAKTGEGIPLLLERIVQQL 187 (606)
Q Consensus 167 ~vSAktG~GV~~LLd~Iv~~i 187 (606)
T Consensus 148 E~SAktg~nV~e~F~~la~~l 168 (169)
T cd04114 148 ETSAKESDNVEKLFLDLACRL 168 (169)
T ss_pred EECCCCCCCHHHHHHHHHHHH
T ss_conf 986898808899999999987