HHsearch alignment for GI: 254780321 and conserved domain: cd04119
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.39 E-value=3.4e-11 Score=94.65 Aligned_cols=153 Identities=20% Similarity=0.311 Sum_probs=101.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHHHH
Q ss_conf 99980138987788999999829805444431130586779871950523279999743788438999961787300279
Q gi|254780321|r 14 FSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDFTY 93 (606)
Q Consensus 14 ~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF~~ 93 (606)
T Consensus 3 ivvvG~~~vGKTSLi~r~~--~~~f~~~y~p-T----------ig~~~~~k--~~~~---~~~~~~l~iwDt~G~~~~~~ 64 (168)
T cd04119 3 VISMGNSGVGKSCIIKRYC--EGRFVSKYLP-T----------IGIDYGVK--KVSV---RNKEVRVNFFDLSGHPEYLE 64 (168)
T ss_pred EEEECCCCCCHHHHHHHHH--HCCCCCCCCC-C----------CCEEEEEE--EEEE---CCEEEEEEEEECCCCHHHHH
T ss_conf 9999959956899999996--3999998589-7----------65577799--9999---99999999998999764789
Q ss_pred HHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH---------CCCCEEEEECCCCCCCCCCCCH--HHHHHHHHHHHH
Q ss_conf 99999973026899998687886558999999997---------0996799832678875321133--888775553223
Q gi|254780321|r 94 EVSRSLSACEGSLLVVDATQGVEAQTLANVYQAID---------NNHEIITVLNKADLPSADPDRV--KKQIEETIGIST 162 (606)
Q Consensus 94 EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~~---------~~l~~I~viNKiD~~~A~~e~v--~~ei~~~~g~~~ 162 (606)
T Consensus 65 ~~~~~~~~ad~~ilvydit~~~Sf~~l~~w~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~-- 142 (168)
T cd04119 65 VRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGF-- 142 (168)
T ss_pred HHHHHHHHCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHCCC--
T ss_conf 999998747788999508974448999999999999824534566862999854034442578899999999998699--
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 2100011100223200678776321
Q gi|254780321|r 163 EDALLVSAKTGEGIPLLLERIVQQL 187 (606)
Q Consensus 163 ~~ii~vSAktG~GV~~LLd~Iv~~i 187 (606)
T Consensus 143 -~~~E~Sak~g~~V~e~F~~l~~~i 166 (168)
T cd04119 143 -KYFETSACTGEGVNEMFQTLFSSI 166 (168)
T ss_pred -EEEEECCCCCCCHHHHHHHHHHHH
T ss_conf -899988577908899999999997