HHsearch alignment for GI: 254780321 and conserved domain: cd04134
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.26 E-value=4.1e-10 Score=87.35 Aligned_cols=160 Identities=19% Similarity=0.190 Sum_probs=101.3
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHH
Q ss_conf 17999801389877889999998298054444311305867798719505232799997437884389999617873002
Q gi|254780321|r 12 RNFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDF 91 (606)
Q Consensus 12 RN~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF 91 (606)
T Consensus 1 ~KivlvGd~~VGKTsli~r~~--~~~F~~~y---------------~~Ti~~~~~~-~~-~v~~~~v~l~iwDTaGqe~~ 61 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFT--RGYFPQVY---------------EPTVFENYVH-DI-FVDGLHIELSLWDTAGQEEF 61 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHH--CCCCCCCC---------------CCCEEEEEEE-EE-EECCEEEEEEEEECCCCCCC
T ss_conf 989999979976999999997--09999986---------------8837899999-99-99999999999847785000
Q ss_pred HHHHHHHHHHCCEEEEEEECCCCCCHHHHH-HHHHHHH---CCCCEEEEECCCCCCCCCCCCHH--HHH------HHHHH
Q ss_conf 799999997302689999868788655899-9999997---09967998326788753211338--887------75553
Q gi|254780321|r 92 TYEVSRSLSACEGSLLVVDATQGVEAQTLA-NVYQAID---NNHEIITVLNKADLPSADPDRVK--KQI------EETIG 159 (606)
Q Consensus 92 ~~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~-~~~~A~~---~~l~~I~viNKiD~~~A~~e~v~--~ei------~~~~g 159 (606)
T Consensus 62 ~~i~~~~y~~a~~~ilvydi~~~~Sf~~v~~~w~~~i~~~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~~is~~eg~~ 141 (189)
T cd04134 62 DRLRSLSYADTDVIMLCFSVDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLA 141 (189)
T ss_pred CHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHCCCCHHHHHHHHHHCCCCCCHHHHHH
T ss_conf 03556764378645999978987899999999999999749799789999880046532356777663046658999999
Q ss_pred H----HHHHHHHHHHHCCCCCCHHHHHHHHHHHCC
Q ss_conf 2----232100011100223200678776321000
Q gi|254780321|r 160 I----STEDALLVSAKTGEGIPLLLERIVQQLPSP 190 (606)
Q Consensus 160 ~----~~~~ii~vSAktG~GV~~LLd~Iv~~iP~P 190 (606)
T Consensus 142 ~Ak~~~~~~y~EtSAkt~~nV~e~F~~lar~~l~~ 176 (189)
T cd04134 142 VAKRINALRYLECSAKLNRGVNEAFTEAARVALNV 176 (189)
T ss_pred HHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHC
T ss_conf 99982997899968067949899999999999735