HHsearch alignment for GI: 254780321 and conserved domain: cd04137

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.40  E-value=1.3e-11  Score=97.50  Aligned_cols=155  Identities=22%  Similarity=0.344  Sum_probs=101.6

Q ss_pred             EEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHH
Q ss_conf             17999801389877889999998298054444311305867798719505232799997437884389999617873002
Q gi|254780321|r   12 RNFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDF   91 (606)
Q Consensus        12 RN~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF   91 (606)
T Consensus         2 ~KIvlvGd~~VGKTsli~r~~--~~~f~~~y-~~Ti----------~~~~-~k--~i~---~~~~~~~l~iwDtaG~e~~   62 (180)
T cd04137           2 RKIAVLGSRSVGKSSLTVQFV--EGHFVESY-YPTI----------ENTF-SK--IIR---YKGQDYHLEIVDTAGQDEY   62 (180)
T ss_pred             CEEEEECCCCCCHHHHHHHHH--CCCCCCCC-CCCC----------CCCC-CE--EEE---ECCEEEEEEEEECCCCCCC
T ss_conf             889999989988999999997--09789985-8812----------4411-37--999---9999999999989987010


Q ss_pred             HHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH-----HCCCCEEEEECCCCCCCCCCCC--HHHHHHHHHHHHHHH
Q ss_conf             799999997302689999868788655899999999-----7099679983267887532113--388877555322321
Q gi|254780321|r   92 TYEVSRSLSACEGSLLVVDATQGVEAQTLANVYQAI-----DNNHEIITVLNKADLPSADPDR--VKKQIEETIGISTED  164 (606)
Q Consensus        92 ~~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~-----~~~l~~I~viNKiD~~~A~~e~--v~~ei~~~~g~~~~~  164 (606)
T Consensus        63 ~~~~~~~~~~a~~~ilvydvt~~~Sf~~~~~~~~~~~~~~~~~~~piilVgNK~DL~~~r~V~~~e~~~~a~~~~~---~  139 (180)
T cd04137          63 SILPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWGA---A  139 (180)
T ss_pred             CHHHHHHHHHCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHCCCCHHHHHHHHHHCCC---E
T ss_conf             0667999863557899974388788999999999999975888886797765346244078899999999998399---8


Q ss_pred             HHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf             000111002232006787763210
Q gi|254780321|r  165 ALLVSAKTGEGIPLLLERIVQQLP  188 (606)
Q Consensus       165 ii~vSAktG~GV~~LLd~Iv~~iP  188 (606)
T Consensus       140 f~EtSAk~g~nV~e~F~~l~~~i~  163 (180)
T cd04137         140 FLESSARENENVEEAFELLIEEIE  163 (180)
T ss_pred             EEEECCCCCCCHHHHHHHHHHHHH
T ss_conf             999776889198999999999998