HHsearch alignment for GI: 254780321 and conserved domain: cd04139

>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.43  E-value=8.7e-12  Score=98.61  Aligned_cols=154  Identities=22%  Similarity=0.240  Sum_probs=100.0

Q ss_pred             EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHHHH
Q ss_conf             99980138987788999999829805444431130586779871950523279999743788438999961787300279
Q gi|254780321|r   14 FSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDFTY   93 (606)
Q Consensus        14 ~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF~~   93 (606)
T Consensus         3 vvlvGd~~VGKTsli~r~~--~~~F~~~y-~pTi----------~~~~-~~--~~---~~~~~~v~l~iwDtaG~e~~~~   63 (164)
T cd04139           3 VIVVGAGGVGKSALTLQFM--YDEFVEDY-EPTK----------ADSY-RK--KV---VLDGEDVQLNILDTAGQEDYAA   63 (164)
T ss_pred             EEEECCCCCCHHHHHHHHH--HCCCCCCC-CCCC----------CCEE-EE--EE---EECCEEEEEEEEECCCCHHHHH
T ss_conf             9999999988999999997--19898774-8854----------4168-99--99---9999999999998988662488


Q ss_pred             HHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHH-HH----CCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999730268999986878865589999999-97----0996799832678875321133888775553223210001
Q gi|254780321|r   94 EVSRSLSACEGSLLVVDATQGVEAQTLANVYQA-ID----NNHEIITVLNKADLPSADPDRVKKQIEETIGISTEDALLV  168 (606)
Q Consensus        94 EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A-~~----~~l~~I~viNKiD~~~A~~e~v~~ei~~~~g~~~~~ii~v  168 (606)
T Consensus        64 l~~~~~~~a~~~ilvydvt~~~Sf~~~~~~~~~~~~~~~~~~~piilVgNK~DL~~~r~-v~~~e~~~~a~~~~~~~~E~  142 (164)
T cd04139          64 IRDNYHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQ-VSSEEAANLARQWGVPYVET  142 (164)
T ss_pred             HHHHHHHHCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEHHHHHCCC-CCHHHHHHHHHHCCCEEEEE
T ss_conf             99998863768899997797788999999999999860878863698733032334177-89999999999839989998


Q ss_pred             HHHCCCCCCHHHHHHHHHH
Q ss_conf             1100223200678776321
Q gi|254780321|r  169 SAKTGEGIPLLLERIVQQL  187 (606)
Q Consensus       169 SAktG~GV~~LLd~Iv~~i  187 (606)
T Consensus       143 SAk~g~nV~~~F~~l~~~i  161 (164)
T cd04139         143 SAKTRQNVEKAFYDLVREI  161 (164)
T ss_pred             CCCCCCCHHHHHHHHHHHH
T ss_conf             2687908899999999999