HHsearch alignment for GI: 254780321 and conserved domain: cd04139
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.43 E-value=8.7e-12 Score=98.61 Aligned_cols=154 Identities=22% Similarity=0.240 Sum_probs=100.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHHHH
Q ss_conf 99980138987788999999829805444431130586779871950523279999743788438999961787300279
Q gi|254780321|r 14 FSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDFTY 93 (606)
Q Consensus 14 ~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF~~ 93 (606)
T Consensus 3 vvlvGd~~VGKTsli~r~~--~~~F~~~y-~pTi----------~~~~-~~--~~---~~~~~~v~l~iwDtaG~e~~~~ 63 (164)
T cd04139 3 VIVVGAGGVGKSALTLQFM--YDEFVEDY-EPTK----------ADSY-RK--KV---VLDGEDVQLNILDTAGQEDYAA 63 (164)
T ss_pred EEEECCCCCCHHHHHHHHH--HCCCCCCC-CCCC----------CCEE-EE--EE---EECCEEEEEEEEECCCCHHHHH
T ss_conf 9999999988999999997--19898774-8854----------4168-99--99---9999999999998988662488
Q ss_pred HHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHH-HH----CCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999730268999986878865589999999-97----0996799832678875321133888775553223210001
Q gi|254780321|r 94 EVSRSLSACEGSLLVVDATQGVEAQTLANVYQA-ID----NNHEIITVLNKADLPSADPDRVKKQIEETIGISTEDALLV 168 (606)
Q Consensus 94 EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A-~~----~~l~~I~viNKiD~~~A~~e~v~~ei~~~~g~~~~~ii~v 168 (606)
T Consensus 64 l~~~~~~~a~~~ilvydvt~~~Sf~~~~~~~~~~~~~~~~~~~piilVgNK~DL~~~r~-v~~~e~~~~a~~~~~~~~E~ 142 (164)
T cd04139 64 IRDNYHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQ-VSSEEAANLARQWGVPYVET 142 (164)
T ss_pred HHHHHHHHCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEHHHHHCCC-CCHHHHHHHHHHCCCEEEEE
T ss_conf 99998863768899997797788999999999999860878863698733032334177-89999999999839989998
Q ss_pred HHHCCCCCCHHHHHHHHHH
Q ss_conf 1100223200678776321
Q gi|254780321|r 169 SAKTGEGIPLLLERIVQQL 187 (606)
Q Consensus 169 SAktG~GV~~LLd~Iv~~i 187 (606)
T Consensus 143 SAk~g~nV~~~F~~l~~~i 161 (164)
T cd04139 143 SAKTRQNVEKAFYDLVREI 161 (164)
T ss_pred CCCCCCCHHHHHHHHHHHH
T ss_conf 2687908899999999999