HHsearch alignment for GI: 254780321 and conserved domain: cd04146
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.26 E-value=1.8e-10 Score=89.84 Aligned_cols=154 Identities=21% Similarity=0.282 Sum_probs=96.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHHHH
Q ss_conf 99980138987788999999829805444431130586779871950523279999743788438999961787300279
Q gi|254780321|r 14 FSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDFTY 93 (606)
Q Consensus 14 ~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF~~ 93 (606)
T Consensus 2 iv~vGd~~VGKTsli~rf~--~~~f~~~y-~~T~----------~~~~-~~--~~~---v~~~~~~l~iwDtaG~e~~~~ 62 (165)
T cd04146 2 IAVLGASGVGKSALVVRFL--TKRFIGEY-DPNL----------ESLY-SR--QVT---IDGEQVSLEILDTAGQQQADT 62 (165)
T ss_pred EEEECCCCCCHHHHHHHHH--HCCCCCCC-CCCC----------CCEE-EE--EEE---ECCEEEEEEEEECCCCCCCCH
T ss_conf 9999989977899999997--49899875-9955----------6305-79--999---999999999992898501220
Q ss_pred H-HHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH-H-----CCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 9-999997302689999868788655899999999-7-----09967998326788753211338887755532232100
Q gi|254780321|r 94 E-VSRSLSACEGSLLVVDATQGVEAQTLANVYQAI-D-----NNHEIITVLNKADLPSADPDRVKKQIEETIGISTEDAL 166 (606)
Q Consensus 94 E-V~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~-~-----~~l~~I~viNKiD~~~A~~e~v~~ei~~~~g~~~~~ii 166 (606)
T Consensus 63 ~~~~~~~~~a~~~ilvydit~~~Sf~~~~~~~~~i~~~~~~~~~~piilVGNK~DL~~~r~-Vs~ee~~~~a~~~~~~f~ 141 (165)
T cd04146 63 EQLERSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQ-VSTEEGEKLASELGCLFF 141 (165)
T ss_pred HHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCC-CCHHHHHHHHHHCCCEEE
T ss_conf 1255430458789999865888999999999999999846699953998445545210367-799999999998199899
Q ss_pred HHHHHCC-CCCCHHHHHHHHHH
Q ss_conf 0111002-23200678776321
Q gi|254780321|r 167 LVSAKTG-EGIPLLLERIVQQL 187 (606)
Q Consensus 167 ~vSAktG-~GV~~LLd~Iv~~i 187 (606)
T Consensus 142 E~SAk~~~~~V~~~F~~l~~~i 163 (165)
T cd04146 142 EVSAAEDYDGVHSVFHELCREV 163 (165)
T ss_pred EEECCCCCCCHHHHHHHHHHHH
T ss_conf 9752087826999999999996