HHsearch alignment for GI: 254780321 and conserved domain: cd04150

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.50  E-value=5.8e-13  Score=106.48  Aligned_cols=147  Identities=17%  Similarity=0.257  Sum_probs=98.3

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHHH
Q ss_conf             79998013898778899999982980544443113058677987195052327999974378843899996178730027
Q gi|254780321|r   13 NFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDFT   92 (606)
Q Consensus        13 N~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF~   92 (606)
T Consensus         2 KililG~~~sGKTsll~~l~--~~~~~~~----------------~pT~g~~~~~~~~-----~~~~l~iwD~~G~~~~r   58 (159)
T cd04150           2 RILMVGLDAAGKTTILYKLK--LGEIVTT----------------IPTIGFNVETVEY-----KNISFTVWDVGGQDKIR   58 (159)
T ss_pred             EEEEECCCCCCHHHHHHHHH--CCCCCCC----------------CCCCCCCEEEEEE-----CCEEEEEEECCCCCCCC
T ss_conf             99999999999899999997--2996775----------------8968701799998-----98999999789972146


Q ss_pred             HHHHHHHHHCCEEEEEEECCCCCCH-HHHHHHHHHHH----CCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHH-----
Q ss_conf             9999999730268999986878865-58999999997----0996799832678875321133888775553223-----
Q gi|254780321|r   93 YEVSRSLSACEGSLLVVDATQGVEA-QTLANVYQAID----NNHEIITVLNKADLPSADPDRVKKQIEETIGIST-----  162 (606)
Q Consensus        93 ~EV~r~l~a~dgaiLvVdA~~Gvq~-QT~~~~~~A~~----~~l~~I~viNKiD~~~A~~e~v~~ei~~~~g~~~-----  162 (606)
T Consensus        59 ~l~~~Y~~~a~~iI~VvD~sd~~~~~~~~~~l~~~l~~~~~~~~pili~~NK~Dl~~~~~~---~ei~~~l~l~~~~~~~  135 (159)
T cd04150          59 PLWRHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMSA---AEVTDKLGLHSLRNRN  135 (159)
T ss_pred             HHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCHHHCCCEEEEEEECCCCCCCCCH---HHHHHHHCHHHHHCCC
T ss_conf             5678647687389999977777899999999999962353369829999975667789899---9999996866663798


Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf             21000111002232006787763
Q gi|254780321|r  163 EDALLVSAKTGEGIPLLLERIVQ  185 (606)
Q Consensus       163 ~~ii~vSAktG~GV~~LLd~Iv~  185 (606)
T Consensus       136 ~~i~~~SA~tG~Gv~e~f~WL~~  158 (159)
T cd04150         136 WYIQATCATSGDGLYEGLDWLSN  158 (159)
T ss_pred             EEEEEEECCCCCCHHHHHHHHHC
T ss_conf             59998268679398999999855