HHsearch alignment for GI: 254780321 and conserved domain: cd04151
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.48 E-value=4.7e-13 Score=107.11 Aligned_cols=146 Identities=22% Similarity=0.269 Sum_probs=97.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHHHH
Q ss_conf 99980138987788999999829805444431130586779871950523279999743788438999961787300279
Q gi|254780321|r 14 FSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDFTY 93 (606)
Q Consensus 14 ~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF~~ 93 (606)
T Consensus 2 il~lG~~~~GKTsll~~~~--~~~~~~~~----------------pTig~~~~~i~~-----~~~~~~iwD~~G~e~~r~ 58 (158)
T cd04151 2 ILILGLDNAGKTTILYRLQ--LGEVVTTI----------------PTIGFNVETVTY-----KNLKFQVWDLGGQTSIRP 58 (158)
T ss_pred EEEECCCCCCHHHHHHHHH--CCCCCCCC----------------CCCCCCEEEEEE-----CCEEEEEEECCCCCCCCH
T ss_conf 9999999998999999997--09967757----------------848824699998-----988999996798624462
Q ss_pred HHHHHHHHCCEEEEEEECCCCCCHHHH-HHHHHHH----HCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHH-----H
Q ss_conf 999999730268999986878865589-9999999----70996799832678875321133888775553223-----2
Q gi|254780321|r 94 EVSRSLSACEGSLLVVDATQGVEAQTL-ANVYQAI----DNNHEIITVLNKADLPSADPDRVKKQIEETIGIST-----E 163 (606)
Q Consensus 94 EV~r~l~a~dgaiLvVdA~~Gvq~QT~-~~~~~A~----~~~l~~I~viNKiD~~~A~~e~v~~ei~~~~g~~~-----~ 163 (606)
T Consensus 59 ~~~~y~~~~~~ii~VvD~sd~~~~~~~~~~l~~~l~~~~~~~~piliv~NK~Dl~~~~~~---~~i~~~l~l~~~~~~~~ 135 (158)
T cd04151 59 YWRCYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALSE---AEISEKLGLSELKDRTW 135 (158)
T ss_pred HHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCH---HHHHHHHHHHHHHCCCC
T ss_conf 788746678899999745787899999999999983465369819999976677657799---99999985987416996
Q ss_pred HHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 1000111002232006787763
Q gi|254780321|r 164 DALLVSAKTGEGIPLLLERIVQ 185 (606)
Q Consensus 164 ~ii~vSAktG~GV~~LLd~Iv~ 185 (606)
T Consensus 136 ~~~~tSA~tG~gV~e~f~wL~~ 157 (158)
T cd04151 136 SIFKTSAIKGEGLDEGMDWLVN 157 (158)
T ss_pred EEEEEECCCCCCHHHHHHHHHC
T ss_conf 8999678789399999999856