HHsearch alignment for GI: 254780321 and conserved domain: cd04152
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.56 E-value=2e-13 Score=109.66 Aligned_cols=156 Identities=17% Similarity=0.220 Sum_probs=104.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHHH
Q ss_conf 79998013898778899999982980544443113058677987195052327999974378843899996178730027
Q gi|254780321|r 13 NFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDFT 92 (606)
Q Consensus 13 N~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF~ 92 (606)
T Consensus 5 kIvilG~~~~GKTsil~r~~--~~~f~~~----------------~pTiG~~~~~~~~~~~~~~~v~l~iwDtaGqe~~r 66 (183)
T cd04152 5 HIVMLGLDSAGKTTVLYRLK--FNEFVNT----------------VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLR 66 (183)
T ss_pred EEEEECCCCCCHHHHHHHHH--CCCCCCC----------------CCCCCEEEEEEEEECCCCCEEEEEEEECCCCCCCC
T ss_conf 99999999998899999996--4986776----------------87035578999996167866799999789873451
Q ss_pred HHHHHHHHHCCEEEEEEECCCCCCH-HHHHHHHHHH----HCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHH------
Q ss_conf 9999999730268999986878865-5899999999----7099679983267887532113388877555322------
Q gi|254780321|r 93 YEVSRSLSACEGSLLVVDATQGVEA-QTLANVYQAI----DNNHEIITVLNKADLPSADPDRVKKQIEETIGIS------ 161 (606)
Q Consensus 93 ~EV~r~l~a~dgaiLvVdA~~Gvq~-QT~~~~~~A~----~~~l~~I~viNKiD~~~A~~e~v~~ei~~~~g~~------ 161 (606)
T Consensus 67 ~l~~~Y~r~a~g~i~V~D~td~~~~~~~~~~l~~~~~~~~~~~~piliv~NK~Dl~~~~~~---~ei~~~l~l~~~~~~~ 143 (183)
T cd04152 67 PLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNALSV---SEVEKLLALHELSAST 143 (183)
T ss_pred EEHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCH---HHHHHHHHHHHHHCCC
T ss_conf 0087674678678999967768899999999999973212379629999866777668788---9999997199986669
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHC
Q ss_conf 3210001110022320067877632100
Q gi|254780321|r 162 TEDALLVSAKTGEGIPLLLERIVQQLPS 189 (606)
Q Consensus 162 ~~~ii~vSAktG~GV~~LLd~Iv~~iP~ 189 (606)
T Consensus 144 ~~~i~~tSA~tG~gI~e~f~~L~~~i~~ 171 (183)
T cd04152 144 PWHVQPACAIIGEGLQEGLEKLYEMILK 171 (183)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 9899972799796989999999999999