HHsearch alignment for GI: 254780321 and conserved domain: cd04157

>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.50  E-value=4.5e-13  Score=107.24  Aligned_cols=149  Identities=17%  Similarity=0.274  Sum_probs=98.7

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHHH
Q ss_conf             79998013898778899999982980544443113058677987195052327999974378843899996178730027
Q gi|254780321|r   13 NFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDFT   92 (606)
Q Consensus        13 N~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF~   92 (606)
T Consensus         1 ~Il~lGl~~sGKTtil~~l~--~~~~~~~~~~pT~----------G~~~----~~~~-----~~~~~~~iwD~~G~~~~r   59 (162)
T cd04157           1 NILVVGLDNSGKTTIINQLK--PENAQSQIIVPTV----------GFNV----ESFE-----KGNLSFTAFDMSGQGKYR   59 (162)
T ss_pred             CEEEECCCCCCHHHHHHHHH--CCCCCCCCCCCCC----------CEEE----EEEE-----ECCEEEEEEECCCCCCCC
T ss_conf             99999999998899999997--2898756416850----------7578----9998-----399889999858874420


Q ss_pred             HHHHHHHHHCCEEEEEEECCCCCCHH-HHHHHHHHHH------CCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHH---
Q ss_conf             99999997302689999868788655-8999999997------0996799832678875321133888775553223---
Q gi|254780321|r   93 YEVSRSLSACEGSLLVVDATQGVEAQ-TLANVYQAID------NNHEIITVLNKADLPSADPDRVKKQIEETIGIST---  162 (606)
Q Consensus        93 ~EV~r~l~a~dgaiLvVdA~~Gvq~Q-T~~~~~~A~~------~~l~~I~viNKiD~~~A~~e~v~~ei~~~~g~~~---  162 (606)
T Consensus        60 ~lw~~y~~~~~~iI~VvDssd~~~~~~~~~~l~~ll~~~~~~~~~~PiLI~~NK~D~~~~~~---~~ei~~~l~l~~~~~  136 (162)
T cd04157          60 GLWEHYYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALT---AVKITQLLGLENIKD  136 (162)
T ss_pred             HHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCHHHCCCCCEEEEEEECCCCCCCCC---HHHHHHHHCHHHHCC
T ss_conf             55898705674489997076388899999999999717655179845999981477889999---999998858665248


Q ss_pred             --HHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf             --21000111002232006787763
Q gi|254780321|r  163 --EDALLVSAKTGEGIPLLLERIVQ  185 (606)
Q Consensus       163 --~~ii~vSAktG~GV~~LLd~Iv~  185 (606)
T Consensus       137 ~~~~i~~~SA~tG~Gi~e~f~WL~~  161 (162)
T cd04157         137 KPWHIFASNALTGEGLDEGVQWLQA  161 (162)
T ss_pred             CCEEEEEEECCCCCCHHHHHHHHHC
T ss_conf             9649999789789798999999865