HHsearch alignment for GI: 254780321 and conserved domain: cd04157
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.50 E-value=4.5e-13 Score=107.24 Aligned_cols=149 Identities=17% Similarity=0.274 Sum_probs=98.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHHH
Q ss_conf 79998013898778899999982980544443113058677987195052327999974378843899996178730027
Q gi|254780321|r 13 NFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDFT 92 (606)
Q Consensus 13 N~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF~ 92 (606)
T Consensus 1 ~Il~lGl~~sGKTtil~~l~--~~~~~~~~~~pT~----------G~~~----~~~~-----~~~~~~~iwD~~G~~~~r 59 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLK--PENAQSQIIVPTV----------GFNV----ESFE-----KGNLSFTAFDMSGQGKYR 59 (162)
T ss_pred CEEEECCCCCCHHHHHHHHH--CCCCCCCCCCCCC----------CEEE----EEEE-----ECCEEEEEEECCCCCCCC
T ss_conf 99999999998899999997--2898756416850----------7578----9998-----399889999858874420
Q ss_pred HHHHHHHHHCCEEEEEEECCCCCCHH-HHHHHHHHHH------CCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHH---
Q ss_conf 99999997302689999868788655-8999999997------0996799832678875321133888775553223---
Q gi|254780321|r 93 YEVSRSLSACEGSLLVVDATQGVEAQ-TLANVYQAID------NNHEIITVLNKADLPSADPDRVKKQIEETIGIST--- 162 (606)
Q Consensus 93 ~EV~r~l~a~dgaiLvVdA~~Gvq~Q-T~~~~~~A~~------~~l~~I~viNKiD~~~A~~e~v~~ei~~~~g~~~--- 162 (606)
T Consensus 60 ~lw~~y~~~~~~iI~VvDssd~~~~~~~~~~l~~ll~~~~~~~~~~PiLI~~NK~D~~~~~~---~~ei~~~l~l~~~~~ 136 (162)
T cd04157 60 GLWEHYYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALT---AVKITQLLGLENIKD 136 (162)
T ss_pred HHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCHHHCCCCCEEEEEEECCCCCCCCC---HHHHHHHHCHHHHCC
T ss_conf 55898705674489997076388899999999999717655179845999981477889999---999998858665248
Q ss_pred --HHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf --21000111002232006787763
Q gi|254780321|r 163 --EDALLVSAKTGEGIPLLLERIVQ 185 (606)
Q Consensus 163 --~~ii~vSAktG~GV~~LLd~Iv~ 185 (606)
T Consensus 137 ~~~~i~~~SA~tG~Gi~e~f~WL~~ 161 (162)
T cd04157 137 KPWHIFASNALTGEGLDEGVQWLQA 161 (162)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHC
T ss_conf 9649999789789798999999865