HHsearch alignment for GI: 254780321 and conserved domain: cd04160
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.61 E-value=9.8e-15 Score=118.39 Aligned_cols=152 Identities=20% Similarity=0.267 Sum_probs=99.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHH--CCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHH
Q ss_conf 99980138987788999999829805444431130586779871--9505232799997437884389999617873002
Q gi|254780321|r 14 FSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERER--GITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDF 91 (606)
Q Consensus 14 ~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreR--GITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF 91 (606)
T Consensus 2 ivilG~~~~GKTsll~~l~--~~-~~~~~~----------~~~~~~~~Tv-----g~~~~~i~~~~~~l~iwD~~Gqe~~ 63 (167)
T cd04160 2 VLILGLDNAGKTTFLEQLK--TL-FSKYKG----------LPPSKITPTV-----GLNIGTIEVGNARLKFWDLGGQESL 63 (167)
T ss_pred EEEECCCCCCHHHHHHHHH--HC-CCCCCC----------CCCCCCCCCC-----CEEEEEEEECCEEEEEEECCCCHHH
T ss_conf 9999999988889999887--50-367677----------7655403531-----3268999989999999968987888
Q ss_pred HHHHHHHHHHCCEEEEEEECCCCCC-HHHHHHHHHHHH----CCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHH-----
Q ss_conf 7999999973026899998687886-558999999997----099679983267887532113388877555322-----
Q gi|254780321|r 92 TYEVSRSLSACEGSLLVVDATQGVE-AQTLANVYQAID----NNHEIITVLNKADLPSADPDRVKKQIEETIGIS----- 161 (606)
Q Consensus 92 ~~EV~r~l~a~dgaiLvVdA~~Gvq-~QT~~~~~~A~~----~~l~~I~viNKiD~~~A~~e~v~~ei~~~~g~~----- 161 (606)
T Consensus 64 ~~l~~~y~~~a~~ii~VvD~sd~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~~~---~~ei~~~~~~~~~~~~ 140 (167)
T cd04160 64 RSLWDKYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDALS---VEEIKEVFQDKAEEIG 140 (167)
T ss_pred HHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCC---HHHHHHHHHHHHHHHC
T ss_conf 7899874289878999986686788999999999975110248962999970667665778---9999999999999854
Q ss_pred --HHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf --3210001110022320067877632
Q gi|254780321|r 162 --TEDALLVSAKTGEGIPLLLERIVQQ 186 (606)
Q Consensus 162 --~~~ii~vSAktG~GV~~LLd~Iv~~ 186 (606)
T Consensus 141 ~~~~~~~~~SAktG~Gv~e~f~wL~~k 167 (167)
T cd04160 141 RRDCLVLPVSALEGTGVREGIEWLVER 167 (167)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHCC
T ss_conf 699899998878294989999999659