HHsearch alignment for GI: 254780321 and conserved domain: cd04167
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=100.00 E-value=0 Score=378.99 Aligned_cols=179 Identities=35% Similarity=0.527 Sum_probs=156.0
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCCCCCC----CCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCC
Q ss_conf 17999801389877889999998298054444----31130586779871950523279999743788438999961787
Q gi|254780321|r 12 RNFSIVAHIDHGKSTLADRFIQHCRGLTEREM----SSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPG 87 (606)
Q Consensus 12 RN~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~----~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPG 87 (606)
T Consensus 1 RNvaiigHvdhGKTTL~d~Ll~~t~~~~~~~~~~~~~~~~~D~~~~E~eRgiTI~s~~~sl~~~~~~~k~~~inlIDTPG 80 (213)
T cd04167 1 RNVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPG 80 (213)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHCCCEECCEEEEEEECCCCCEEEEEEEECCC
T ss_conf 95999827898989999999997344555404442113575164665420355861459999825667505787788987
Q ss_pred CCHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCC-------CCCC----CCCHHHHHHH
Q ss_conf 3002799999997302689999868788655899999999709967998326788-------7532----1133888775
Q gi|254780321|r 88 HVDFTYEVSRSLSACEGSLLVVDATQGVEAQTLANVYQAIDNNHEIITVLNKADL-------PSAD----PDRVKKQIEE 156 (606)
Q Consensus 88 H~DF~~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~~~~l~~I~viNKiD~-------~~A~----~e~v~~ei~~ 156 (606)
T Consensus 81 H~dF~~ev~~al~~~DgailVVDa~eGv~~qT~~~l~~a~~~~l~~ilviNKiDRLi~el~l~p~day~~~~~ii~~vn~ 160 (213)
T cd04167 81 HVNFMDEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAILEGLPIVLVINKIDRLILELKLPPNDAYFKLRHIIDEVNN 160 (213)
T ss_pred CHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf 24179999988863776799998788875779999999998699989999882343144069989999989999999999
Q ss_pred HHH-----------HHHHHHHHHHHHCCC--------CCCHHHHHHHHHHHCC
Q ss_conf 553-----------223210001110022--------3200678776321000
Q gi|254780321|r 157 TIG-----------ISTEDALLVSAKTGE--------GIPLLLERIVQQLPSP 190 (606)
Q Consensus 157 ~~g-----------~~~~~ii~vSAktG~--------GV~~LLd~Iv~~iP~P 190 (606)
T Consensus 161 ~i~~~~~~~~~~~~p~~~nV~f~Sa~~gw~ftl~~fa~~y~l~d~i~~~ip~P 213 (213)
T cd04167 161 IIASFSTTLSFLFSPENGNVCFASSKFGFCFTLESFAKKYGLVDSIVSNIPSP 213 (213)
T ss_pred HHHHHCCCCCCEECCCCCCEEEEEECCCEEECCCCHHHHHHHHHHHHHHCCCC
T ss_conf 99970787351656887969999700052123623211689999999638898