HHsearch alignment for GI: 254780321 and conserved domain: cd04173
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=98.86 E-value=2.3e-07 Score=68.91 Aligned_cols=147 Identities=17% Similarity=0.252 Sum_probs=92.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEE-EEEEEEECCCCCEEEEEEEECCCCCHHH
Q ss_conf 999801389877889999998298054444311305867798719505232-7999974378843899996178730027
Q gi|254780321|r 14 FSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQ-TVRLNYTSTDAKDYQLNLIDTPGHVDFT 92 (606)
Q Consensus 14 ~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~-~~~~~~~~~~~~~y~iNlIDTPGH~DF~ 92 (606)
T Consensus 4 iVlvGD~~VGKTsLl~~f~--~~~F~~~y---------------~pTi~~~~~~~~~---vd~~~v~L~iWDTAGqE~y~ 63 (222)
T cd04173 4 IVVVGDAECGKTALLQVFA--KDAYPGSY---------------VPTVFENYTASFE---IDKRRIELNMWDTSGSSYYD 63 (222)
T ss_pred EEEECCCCCCHHHHHHHHH--CCCCCCCC---------------CCCEEEEEEEEEE---ECCEEEEEEEECCCCCCHHH
T ss_conf 9998989989899999996--39999984---------------7845877899999---99999999997688850345
Q ss_pred HHHHHHHHHCCEEEEEEECCCCCCHHHHHH---HHH-HHH---CCCCEEEEECCCCCCCCCCCCHHHHHHH---------
Q ss_conf 999999973026899998687886558999---999-997---0996799832678875321133888775---------
Q gi|254780321|r 93 YEVSRSLSACEGSLLVVDATQGVEAQTLAN---VYQ-AID---NNHEIITVLNKADLPSADPDRVKKQIEE--------- 156 (606)
Q Consensus 93 ~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~---~~~-A~~---~~l~~I~viNKiD~~~A~~e~v~~ei~~--------- 156 (606)
T Consensus 64 ~lr~~yyr~a~~~llvfdit~---~~SF~~v~~~W~~ei~~~~p~~piiLVGnK~DLR~-d~~~-~~el~~~~~~pVt~e 138 (222)
T cd04173 64 NVRPLAYPDSDAVLICFDISR---PETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRT-DLAT-LRELSKQRLIPVTHE 138 (222)
T ss_pred HHHHHHCCCCCEEEEEEECCC---HHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCC-CHHH-HHHHHHCCCCCCCHH
T ss_conf 567875036989999983897---78899999999999998589997899958742456-8788-999985578887899
Q ss_pred ----HH-HHHHHHHHHHHHHCCC-CCCHHHHHHHH
Q ss_conf ----55-3223210001110022-32006787763
Q gi|254780321|r 157 ----TI-GISTEDALLVSAKTGE-GIPLLLERIVQ 185 (606)
Q Consensus 157 ----~~-g~~~~~ii~vSAktG~-GV~~LLd~Iv~ 185 (606)
T Consensus 139 eg~~lA~~~ga~~y~EcSAk~~~n~V~evF~~a~~ 173 (222)
T cd04173 139 QGTVLAKQVGAVSYVECSSRSSERSVRDVFHVATV 173 (222)
T ss_pred HHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHH
T ss_conf 99999997699889988848687498999999999