HHsearch alignment for GI: 254780321 and conserved domain: cd04174

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.87  E-value=3.6e-07  Score=67.64  Aligned_cols=159  Identities=22%  Similarity=0.239  Sum_probs=99.3

Q ss_pred             CCCCHHHCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEE-EEEEEEECCCCCEEEEEE
Q ss_conf             8998525317999801389877889999998298054444311305867798719505232-799997437884389999
Q gi|254780321|r    4 KPTPLSRIRNFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQ-TVRLNYTSTDAKDYQLNL   82 (606)
Q Consensus         4 ~~~p~~~IRN~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~-~~~~~~~~~~~~~y~iNl   82 (606)
T Consensus         6 ~~~p~~~~~KiVlVGD~~VGKTsLl~~~~--~~~F~~~y---------------~pTv~~~~~~~i~---v~~~~v~L~l   65 (232)
T cd04174           6 IPQPLVMRCKLVLVGDVQCGKTAMLQVLA--KDCYPETY---------------VPTVFENYTAGLE---TEEQRVELSL   65 (232)
T ss_pred             CCCCCCEEEEEEEECCCCCCHHHHHHHHH--HCCCCCCC---------------CCCEEEEEEEEEE---ECCEEEEEEE
T ss_conf             99998558899999989989999999997--39899985---------------8836888899999---9999999999


Q ss_pred             EECCCCCHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHH----HHHHH-H--CCCCEEEEECCCCCCCCCCCCHHHHHH
Q ss_conf             6178730027999999973026899998687886558999----99999-7--099679983267887532113388877
Q gi|254780321|r   83 IDTPGHVDFTYEVSRSLSACEGSLLVVDATQGVEAQTLAN----VYQAI-D--NNHEIITVLNKADLPSADPDRVKKQIE  155 (606)
Q Consensus        83 IDTPGH~DF~~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~----~~~A~-~--~~l~~I~viNKiD~~~A~~e~v~~ei~  155 (606)
T Consensus        66 WDTAGqE~y~~lr~~yY~~a~~~ll~Fdvt---~~~Sfe~~~~~Wi~Ei~~~~p~~piiLVGnK~DLr~-d~~-~l~~L~  140 (232)
T cd04174          66 WDTSGSPYYDNVRPLCYSDSDAVLLCFDIS---RPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLRT-DLS-TLMELS  140 (232)
T ss_pred             EECCCCCCCCHHHHHHHCCCCEEEEEEECC---CHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHCCC-CHH-HHHHHH
T ss_conf             838997010036799740687899999689---879999899999999998689997899987602154-757-788997


Q ss_pred             H-------------HH-HHHHHHHHHHHHHCCC-CCCHHHHHHHHHH
Q ss_conf             5-------------55-3223210001110022-3200678776321
Q gi|254780321|r  156 E-------------TI-GISTEDALLVSAKTGE-GIPLLLERIVQQL  187 (606)
Q Consensus       156 ~-------------~~-g~~~~~ii~vSAktG~-GV~~LLd~Iv~~i  187 (606)
T Consensus       141 ~~~~~pVt~eeg~~~Ak~iga~~Y~E~SA~tge~~v~~vF~~a~~~~  187 (232)
T cd04174         141 NQKQAPISYEQGCALAKQLGAEVYLECSAFTSEKSIHSIFRSASLLC  187 (232)
T ss_pred             HCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHH
T ss_conf             56888757999999999749978998756866625999999999999