HHsearch alignment for GI: 254780321 and conserved domain: cd04176

>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.37  E-value=2.8e-11  Score=95.19  Aligned_cols=151  Identities=23%  Similarity=0.284  Sum_probs=100.8

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHHH
Q ss_conf             79998013898778899999982980544443113058677987195052327999974378843899996178730027
Q gi|254780321|r   13 NFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDFT   92 (606)
Q Consensus        13 N~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF~   92 (606)
T Consensus         3 KivllGd~~VGKTsli~r~~--~~~f~~~y-~pTi~~-----------~~~k~--i---~~~~~~~~l~iwDtaG~e~~~   63 (163)
T cd04176           3 KVVVLGSGGVGKSALTVQFV--SGTFIEKY-DPTIED-----------FYRKE--I---EVDSSPSVLEILDTAGTEQFA   63 (163)
T ss_pred             EEEEECCCCCCHHHHHHHHH--HCCCCCCC-CCCCCC-----------EEEEE--E---EECCEEEEEEEEECCCCHHHH
T ss_conf             99998999978999999997--09899755-885233-----------16799--9---988899999999898854256


Q ss_pred             HHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH-H----CCCCEEEEECCCCCCCCCCCCH-HHHHH---HHHHHHHH
Q ss_conf             99999997302689999868788655899999999-7----0996799832678875321133-88877---55532232
Q gi|254780321|r   93 YEVSRSLSACEGSLLVVDATQGVEAQTLANVYQAI-D----NNHEIITVLNKADLPSADPDRV-KKQIE---ETIGISTE  163 (606)
Q Consensus        93 ~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~-~----~~l~~I~viNKiD~~~A~~e~v-~~ei~---~~~g~~~~  163 (606)
T Consensus        64 ~~~~~~~~~a~~~ilvydit~~~Sf~~l~~~~~~i~~~~~~~~~piilVgNK~DL~~~r--~V~~~e~~~~a~~~~~---  138 (163)
T cd04176          64 SMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESER--EVSSAEGRALAEEWGC---  138 (163)
T ss_pred             HHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCC--CCCHHHHHHHHHHCCC---
T ss_conf             78899855786568971279889999999999999997389996399974313400127--6999999999998599---


Q ss_pred             HHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf             100011100223200678776321
Q gi|254780321|r  164 DALLVSAKTGEGIPLLLERIVQQL  187 (606)
Q Consensus       164 ~ii~vSAktG~GV~~LLd~Iv~~i  187 (606)
T Consensus       139 ~~~E~SAk~~~nV~~~F~~l~~~i  162 (163)
T cd04176         139 PFMETSAKSKTMVNELFAEIVRQM  162 (163)
T ss_pred             EEEEECCCCCCCHHHHHHHHHHHH
T ss_conf             899985687817799999999953