HHsearch alignment for GI: 254780321 and conserved domain: smart00177
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.50 E-value=7.9e-13 Score=105.62 Aligned_cols=150 Identities=19% Similarity=0.224 Sum_probs=101.3
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHH
Q ss_conf 17999801389877889999998298054444311305867798719505232799997437884389999617873002
Q gi|254780321|r 12 RNFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDF 91 (606)
Q Consensus 12 RN~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF 91 (606)
T Consensus 14 ~kililG~~~~GKTsil~~l~--~~~~~~~----------------~pTvg~~~~~~~~-----~~~~l~iwD~~Gqe~~ 70 (175)
T smart00177 14 MRILMVGLDAAGKTTILYKLK--LGESVTT----------------IPTIGFNVETVTY-----KNISFTVWDVGGQDKI 70 (175)
T ss_pred EEEEEECCCCCCHHHHHHHHH--CCCCCCC----------------CCCCCCEEEEEEE-----CCEEEEEEECCCCCCC
T ss_conf 999999889999899999996--5997775----------------7978810799998-----9899999989998545
Q ss_pred HHHHHHHHHHCCEEEEEEECCCCCCH-HHHHHHHHHH----HCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHH----
Q ss_conf 79999999730268999986878865-5899999999----70996799832678875321133888775553223----
Q gi|254780321|r 92 TYEVSRSLSACEGSLLVVDATQGVEA-QTLANVYQAI----DNNHEIITVLNKADLPSADPDRVKKQIEETIGIST---- 162 (606)
Q Consensus 92 ~~EV~r~l~a~dgaiLvVdA~~Gvq~-QT~~~~~~A~----~~~l~~I~viNKiD~~~A~~e~v~~ei~~~~g~~~---- 162 (606)
T Consensus 71 r~l~~~Yy~~a~~iIfVvD~sd~~~~~~~~~~l~~~l~~~~~~~~piLil~NK~Dl~~~~~~---~ei~~~l~l~~~~~~ 147 (175)
T smart00177 71 RPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMKA---AEITEKLGLHSIRDR 147 (175)
T ss_pred CHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCHHHCCCEEEEEEECCCCCCCCCH---HHHHHHHCHHHHCCC
T ss_conf 53677755776189999866877899999999999963153169869999845667678899---999999686654079
Q ss_pred -HHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf -2100011100223200678776321
Q gi|254780321|r 163 -EDALLVSAKTGEGIPLLLERIVQQL 187 (606)
Q Consensus 163 -~~ii~vSAktG~GV~~LLd~Iv~~i 187 (606)
T Consensus 148 ~~~i~~~SA~tG~GI~e~f~wL~~~i 173 (175)
T smart00177 148 NWYIQPTCATSGDGLYEGLTWLSNNL 173 (175)
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 75999826878969899999999984