BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780321|ref|YP_003064734.1| GTP-binding protein LepA
[Candidatus Liberibacter asiaticus str. psy62]
(606 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780321|ref|YP_003064734.1| GTP-binding protein LepA [Candidatus Liberibacter asiaticus str.
psy62]
Length = 606
Score = 1246 bits (3225), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 606/606 (100%), Positives = 606/606 (100%)
Query: 1 MQKKPTPLSRIRNFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGIT 60
MQKKPTPLSRIRNFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGIT
Sbjct: 1 MQKKPTPLSRIRNFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGIT 60
Query: 61 IKAQTVRLNYTSTDAKDYQLNLIDTPGHVDFTYEVSRSLSACEGSLLVVDATQGVEAQTL 120
IKAQTVRLNYTSTDAKDYQLNLIDTPGHVDFTYEVSRSLSACEGSLLVVDATQGVEAQTL
Sbjct: 61 IKAQTVRLNYTSTDAKDYQLNLIDTPGHVDFTYEVSRSLSACEGSLLVVDATQGVEAQTL 120
Query: 121 ANVYQAIDNNHEIITVLNKADLPSADPDRVKKQIEETIGISTEDALLVSAKTGEGIPLLL 180
ANVYQAIDNNHEIITVLNKADLPSADPDRVKKQIEETIGISTEDALLVSAKTGEGIPLLL
Sbjct: 121 ANVYQAIDNNHEIITVLNKADLPSADPDRVKKQIEETIGISTEDALLVSAKTGEGIPLLL 180
Query: 181 ERIVQQLPSPTSPEGANAPLKALLIDSWYNSYLGVMVLVRIINGQLTKGQSIRLMGTNAK 240
ERIVQQLPSPTSPEGANAPLKALLIDSWYNSYLGVMVLVRIINGQLTKGQSIRLMGTNAK
Sbjct: 181 ERIVQQLPSPTSPEGANAPLKALLIDSWYNSYLGVMVLVRIINGQLTKGQSIRLMGTNAK 240
Query: 241 YQVERIGILTPKMIDIEALYPGEIGVMIASIKEVSHTRVGDTITDDSSPTTSALPGFKPI 300
YQVERIGILTPKMIDIEALYPGEIGVMIASIKEVSHTRVGDTITDDSSPTTSALPGFKPI
Sbjct: 241 YQVERIGILTPKMIDIEALYPGEIGVMIASIKEVSHTRVGDTITDDSSPTTSALPGFKPI 300
Query: 301 QPVVFCGLFPVDATQFENLRTAINKLRLNDASFSFELENSTALGFGFRCGFLGLLHLEII 360
QPVVFCGLFPVDATQFENLRTAINKLRLNDASFSFELENSTALGFGFRCGFLGLLHLEII
Sbjct: 301 QPVVFCGLFPVDATQFENLRTAINKLRLNDASFSFELENSTALGFGFRCGFLGLLHLEII 360
Query: 361 QERLEREFSLNLIGTSPSVVYELYMHDGSMQKLSNPIDMPEVTKIAELREPWIQVTIITP 420
QERLEREFSLNLIGTSPSVVYELYMHDGSMQKLSNPIDMPEVTKIAELREPWIQVTIITP
Sbjct: 361 QERLEREFSLNLIGTSPSVVYELYMHDGSMQKLSNPIDMPEVTKIAELREPWIQVTIITP 420
Query: 421 NEYLGSILKLCQERRGIQIDMSHLDNRAMIVYELPLNEVIFDFYDRLKSVSKGYASFDYN 480
NEYLGSILKLCQERRGIQIDMSHLDNRAMIVYELPLNEVIFDFYDRLKSVSKGYASFDYN
Sbjct: 421 NEYLGSILKLCQERRGIQIDMSHLDNRAMIVYELPLNEVIFDFYDRLKSVSKGYASFDYN 480
Query: 481 VIDYRDSDLVKLTILVNNETIDALSILVHRSVSEKRGRGICEKLKNLIPQQMFQIAIQAA 540
VIDYRDSDLVKLTILVNNETIDALSILVHRSVSEKRGRGICEKLKNLIPQQMFQIAIQAA
Sbjct: 481 VIDYRDSDLVKLTILVNNETIDALSILVHRSVSEKRGRGICEKLKNLIPQQMFQIAIQAA 540
Query: 541 IGGRIIARETVKARRKDVTAKCYGGDITRKRKLLEKQKEGKKRMRRFGRVDIPQSAFISI 600
IGGRIIARETVKARRKDVTAKCYGGDITRKRKLLEKQKEGKKRMRRFGRVDIPQSAFISI
Sbjct: 541 IGGRIIARETVKARRKDVTAKCYGGDITRKRKLLEKQKEGKKRMRRFGRVDIPQSAFISI 600
Query: 601 LKTDNE 606
LKTDNE
Sbjct: 601 LKTDNE 606
>gi|254780233|ref|YP_003064646.1| GTP-binding protein [Candidatus Liberibacter asiaticus str. psy62]
Length = 624
Score = 122 bits (306), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 118/400 (29%), Positives = 189/400 (47%), Gaps = 43/400 (10%)
Query: 10 RIRNFSIVAHIDHGKSTLADRFIQHCRGLTERE-MSSQVLDNMDIERERGITIKAQTVRL 68
+IRN +I+AH+DHGK+TL D ++ + + +S +V+D D+E+ERGITI A+
Sbjct: 18 QIRNIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKV--- 74
Query: 69 NYTSTDAKDYQLNLIDTPGHVDFTYEVSRSLSACEGSLLVVDATQGVEAQTLANVYQAID 128
TS D ++N++DTPGH DF EV R L E +++VDA +G QT V +A+
Sbjct: 75 --TSIVWNDVRINIVDTPGHADFGGEVERILCMVESVVVLVDAAEGPMPQTKFVVGKALK 132
Query: 129 NNHEIITVLNKADLPSADPDRVKKQIEETI-GISTEDA------LLVSAKTG-------- 173
I V+NK D A D V ++ + + DA L S + G
Sbjct: 133 IGLRPIVVVNKVDRSDARADEVINEVFDLFSALDATDAQLDFPILYGSGRFGWMSDSSDG 192
Query: 174 ---EGIPLLLERIVQQLPSPTSPEGANAPLKALLIDSWYNSYLGVMVLVRIINGQLTKGQ 230
+G+ LL IV +P P EG + +L + +LG +V RI +G + Q
Sbjct: 193 SRDQGMVPLLNLIVDHVPPPVISEGEFKMIGTIL---EKDPFLGRIVTGRIHSGTIKSNQ 249
Query: 231 SIRLMGTN-AKYQVERIG-ILTPKMIDIEALYPGEIGVMIASIKEVSHTRVGDTITDDSS 288
+I+ + + A +V R+ IL + ID + + G I SI + V DT D
Sbjct: 250 NIKALSPDGALVEVGRVSKILAFRGIDRQPIDEAHAG-DIVSIAGLVKATVADTFCD--- 305
Query: 289 PTTSALPGFKPIQPVVFCGLF-----PVDATQFENLRTAINKLRL---NDASFSFELENS 340
P+ +PI P F P+ T+ + + + + + RL + + + ++E S
Sbjct: 306 PSIDEPLKAQPIDPPTVTMTFGVNDSPLAGTEGDKVTSRMIRDRLFKEAEGNIALKIEES 365
Query: 341 TALGFGFRCGFLGLLHLEIIQERLEREFSLNLIGTSPSVV 380
++ F G G L L ++ E + RE L + P VV
Sbjct: 366 SSKDAFFVSG-RGELQLAVLIETMRRE-GFELAVSRPRVV 403
>gi|254780264|ref|YP_003064677.1| elongation factor G [Candidatus Liberibacter asiaticus str. psy62]
Length = 701
Score = 97.1 bits (240), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 56/151 (37%), Positives = 82/151 (54%), Gaps = 3/151 (1%)
Query: 12 RNFSIVAHIDHGKSTLADRFIQHC---RGLTEREMSSQVLDNMDIERERGITIKAQTVRL 68
RNF I+AHID GK+T +R + + + E S +D M+ E+ERGITI + + +
Sbjct: 11 RNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTV 70
Query: 69 NYTSTDAKDYQLNLIDTPGHVDFTYEVSRSLSACEGSLLVVDATQGVEAQTLANVYQAID 128
+ D +L +IDTPGHVDFT EV RS+ +G++ ++D+ GVE QT QA
Sbjct: 71 FWPGRDGGQKKLTIIDTPGHVDFTMEVERSIRVTDGAIALLDSNAGVEPQTETVWRQADK 130
Query: 129 NNHEIITVLNKADLPSADPDRVKKQIEETIG 159
+ + NK D AD R + I +G
Sbjct: 131 YSVPRVIFCNKMDKMGADFYRSVEMISSRLG 161
Score = 70.5 bits (171), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 70/256 (27%), Positives = 116/256 (45%), Gaps = 34/256 (13%)
Query: 148 DRVKKQIE-ETIGISTEDALLVSAKTGEGIPLLLERIVQQLPSPTSPEGA---------- 196
DR++ I TI + L S+ +G+ LL+ +V LPSP
Sbjct: 244 DRIRSLIRLGTISVKFFPVLCGSSFKNKGVQPLLDAVVDYLPSPLDVRAIKGVDVKSNSE 303
Query: 197 -------NAPLKALLIDSWYNSYLGVMVLVRIINGQLTKGQSIRLMGTNAKYQVERIGIL 249
++PL L +S++G + RI +G+++KG S L+ T K + ER+G +
Sbjct: 304 IDVSAVDSSPLSMLAFKVMADSFVGSLTFCRIYSGKISKGDS--LLNT-VKGKKERVGRM 360
Query: 250 ----TPKMIDIEALYPGEIGVMIASIKEVSHTRVGDTITDDSSPTTSALPGFKPIQPVVF 305
+ DI+ Y G+I + +A +KE T GDT+ D S P F +PV+
Sbjct: 361 LQMHSNSREDIDEAYCGDI-IALAGLKE---TTTGDTLCDPSRPIVLERMDFP--EPVIQ 414
Query: 306 CGLFPVDATQFENLRTAINKLRLNDASFSFELENSTALGFGFRCGFLGLLHLEIIQERLE 365
+ P E + A+++L D S ++ ++ +G LHLEII +R+
Sbjct: 415 IAIEPKSKGDQERMSLALSRLVAEDPSLRVSMDPNSGQ---TNLSGMGELHLEIIVDRML 471
Query: 366 REFSLNLIGTSPSVVY 381
REF ++ +P V Y
Sbjct: 472 REFKVDANVGAPYVSY 487
Score = 38.5 bits (88), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 41/74 (55%), Gaps = 7/74 (9%)
Query: 407 ELREPWIQVTIITPNEYLGSILKLCQERRGIQIDMSHLDNRAMIVY---ELPLNEVIFDF 463
+L EP ++V + P EY+G ++ RRG + +NR++ V +PL+ +F +
Sbjct: 604 QLLEPLMKVEVTVPAEYVGDVIGDLSSRRG---QIQGQENRSVYVVIDAHVPLS-CMFKY 659
Query: 464 YDRLKSVSKGYASF 477
D L+S+S+G +
Sbjct: 660 VDSLRSMSQGRGQY 673
>gi|254780263|ref|YP_003064676.1| translation elongation factor Tu [Candidatus Liberibacter asiaticus
str. psy62]
Length = 392
Score = 53.9 bits (128), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 64/130 (49%), Gaps = 9/130 (6%)
Query: 13 NFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTS 72
S + H+DHGK+TL ++ +E + +D+ E+ RGITI T ++Y
Sbjct: 14 GLSTIGHVDHGKTTLTAAITKY---YSEEKKEYGDIDSAPEEKLRGITI--ATAHVSY-E 67
Query: 73 TDAKDYQLNLIDTPGHVDFTYEVSRSLSACEGSLLVVDATQGVEAQTLANVYQAID-NNH 131
TD + Y + ID PGH D+ + + +G++LV A G + QT ++ A
Sbjct: 68 TDKRFY--SHIDCPGHADYVKNMITGATQADGAILVCAAEDGPKPQTREHILLARQIGIS 125
Query: 132 EIITVLNKAD 141
I+ +NK D
Sbjct: 126 SIVVYMNKVD 135
>gi|254780150|ref|YP_003064563.1| translation elongation factor Tu [Candidatus Liberibacter asiaticus
str. psy62]
Length = 392
Score = 53.9 bits (128), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 64/130 (49%), Gaps = 9/130 (6%)
Query: 13 NFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTS 72
S + H+DHGK+TL ++ +E + +D+ E+ RGITI T ++Y
Sbjct: 14 GLSTIGHVDHGKTTLTAAITKY---YSEEKKEYGDIDSAPEEKLRGITI--ATAHVSY-E 67
Query: 73 TDAKDYQLNLIDTPGHVDFTYEVSRSLSACEGSLLVVDATQGVEAQTLANVYQAID-NNH 131
TD + Y + ID PGH D+ + + +G++LV A G + QT ++ A
Sbjct: 68 TDKRFY--SHIDCPGHADYVKNMITGATQADGAILVCAAEDGPKPQTREHILLARQIGIS 125
Query: 132 EIITVLNKAD 141
I+ +NK D
Sbjct: 126 SIVVYMNKVD 135
>gi|254780787|ref|YP_003065200.1| translation initiation factor IF-2 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 884
Score = 52.8 bits (125), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/223 (23%), Positives = 96/223 (43%), Gaps = 31/223 (13%)
Query: 15 SIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERER--GITIKAQTVRLNYTS 72
+I+ H+DHGK++L D + D+ + GIT ++ Y
Sbjct: 387 TIMGHVDHGKTSLLD-----------------AIRKADVAKGEIGGITQHIGAYQVAYQG 429
Query: 73 TDAKDYQLNLIDTPGHVDFTYEVSRSLSACEGSLLVVDATQGVEAQTLANVYQAIDNNHE 132
+ + +DTPGH F +R + ++LV+ A + + Q + ++ A +
Sbjct: 430 KN-----ITFLDTPGHAAFYEMRARGARVTDIAVLVLAADEEIMPQAIESINHAKAADVS 484
Query: 133 IITVLNKADLPSADPDRVKKQI------EETIGISTEDALLVSAKTGEGIPLLLERIVQQ 186
II +NK D ADP +V+ + E++G D + +SAK + LL+ I+ Q
Sbjct: 485 IIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILD-VEISAKNNLNLDKLLDAILLQ 543
Query: 187 LPSPTSPEGANAPLKALLIDSWYNSYLGVMVLVRIINGQLTKG 229
N + ++++ + G +V V + G L+KG
Sbjct: 544 AEMLDLKTSINRKAEGIVVEGKLDRGRGPVVTVLVQKGTLSKG 586
>gi|255764471|ref|YP_003064835.2| GTP-binding protein EngA [Candidatus Liberibacter asiaticus str.
psy62]
Length = 470
Score = 45.8 bits (107), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/221 (23%), Positives = 95/221 (42%), Gaps = 44/221 (19%)
Query: 8 LSRIRNFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVR 67
+S+ ++V + GKSTL +R + + R LT + GIT + ++
Sbjct: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQ--------------SGITRDSVSIS 245
Query: 68 LNYTSTDAKDYQLNLIDT-----PGHVDFTYE---VSRSLSA---CEGSLLVVDATQGVE 116
N+ K++ + + DT P + + E V +S+ + CE +++++DAT E
Sbjct: 246 WNW-----KNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300
Query: 117 AQTLANVYQAIDNNHEIITVLNKADLPSAD----PDRVKKQIEETIGISTEDALLVSAKT 172
Q L V + H ++ LNK D+ S D K I+ I +S +T
Sbjct: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360
Query: 173 GEGIPLLLERIVQQLPSPTSPEGANAPLKALLIDSWYNSYL 213
GEG+ L+ +++ N K + S+ NS+L
Sbjct: 361 GEGLDDLMVSVLE----------INKLWKTRITTSYLNSWL 391
>gi|254780941|ref|YP_003065354.1| GTP-binding protein Era [Candidatus Liberibacter asiaticus str.
psy62]
Length = 311
Score = 32.7 bits (73), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 78/190 (41%), Gaps = 32/190 (16%)
Query: 9 SRIRNFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVR- 67
SR ++V + GKSTL +RF+ + +T K QT R
Sbjct: 20 SRSGCVALVGATNAGKSTLVNRFVG--------------------AKVSIVTHKVQTTRS 59
Query: 68 LNYTSTDAKDYQLNLIDTPG--HVDFTYE---VSRSLSACEGS---LLVVDATQGVEAQT 119
+ K+ Q+ +DTPG + +Y + S S + + LVVD+ + ++
Sbjct: 60 IVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNI 119
Query: 120 LANVYQAIDNNHEIITVLNKADLPSADPDRVKKQIE-ETIGISTEDALLVSAKTGEGIPL 178
+ + + +I +LNK D P+R+ +Q E + E +VSA G G
Sbjct: 120 HDLLKEIAKRSSRLILILNKID--CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDD 177
Query: 179 LLERIVQQLP 188
+L + LP
Sbjct: 178 VLNYLCSTLP 187
>gi|254780232|ref|YP_003064645.1| inorganic pyrophosphatase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 177
Score = 27.7 bits (60), Expect = 0.49, Method: Composition-based stats.
Identities = 20/89 (22%), Positives = 36/89 (40%), Gaps = 14/89 (15%)
Query: 232 IRLMGTNAKYQVERIG--ILTPKMIDIEALYPGEIGVMIASIKEVSHTRVGDTITDDSSP 289
I L G KY++++ ++ + I LYPG G + +T++DD P
Sbjct: 23 ISLGGYPIKYEMDKKSGVLVVDRFISTPMLYPGNYGF------------IPNTLSDDGDP 70
Query: 290 TTSALPGFKPIQPVVFCGLFPVDATQFEN 318
+ +PI P P+ + E+
Sbjct: 71 VDVIMYSSEPILPGSVISTRPIGVMKMED 99
>gi|254780300|ref|YP_003064713.1| aspartate carbamoyltransferase catalytic subunit [Candidatus
Liberibacter asiaticus str. psy62]
Length = 316
Score = 26.2 bits (56), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 7/67 (10%)
Query: 67 RLNYTSTDAKDYQLNLIDTPGHVDFTYEVSRSLSACEGSLLVVDATQGVEAQTLANVYQA 126
+L Y DA L+ PG ++ YE+S S++ S++ GV A +A + +
Sbjct: 252 KLKYAKKDA------LVMHPGPINRNYEISSSVADGSQSIIQYQVEMGV-AVRMAIIKEL 304
Query: 127 IDNNHEI 133
++N ++I
Sbjct: 305 LENQNKI 311
Score = 23.9 bits (50), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 4/84 (4%)
Query: 214 GVMVLVRIINGQLTKGQSIRLMGTNAKYQVERIGILTPKMIDIEALYPGEIGVMIASIKE 273
G ++ V +IN TK +++ G N + + L P +I I Y G + ++ IK
Sbjct: 68 GKLLGVHVININ-TKNSAMK-KGENIADTIATLNALRPNIIVIRHPYSGAVNSLMHKIKG 125
Query: 274 VSHTRVGDTITDDSSPTTSALPGF 297
S GD + P+ + L F
Sbjct: 126 PSIINAGDGTHEH--PSQALLDAF 147
>gi|254780814|ref|YP_003065227.1| DNA gyrase subunit B [Candidatus Liberibacter asiaticus str. psy62]
Length = 803
Score = 25.8 bits (55), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/78 (21%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
Query: 313 ATQFENLRTAINK--LRLNDASFSFELENSTALGFGFRCGFLGLLHLEIIQERLEREFSL 370
T LR+A+ + + SF + + + +G R GF +L +++ R +
Sbjct: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
Query: 371 NLIGTSPSVVYELYMHDG 388
L+ + V E +++DG
Sbjct: 346 KLVSSEVRSVVESFVNDG 363
>gi|254780846|ref|YP_003065259.1| bifunctional riboflavin kinase/FMN adenylyltransferase [Candidatus
Liberibacter asiaticus str. psy62]
Length = 324
Score = 25.4 bits (54), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 28/68 (41%)
Query: 454 LPLNEVIFDFYDRLKSVSKGYASFDYNVIDYRDSDLVKLTILVNNETIDALSILVHRSVS 513
L L IFDF + + FDY + + D+ KL I + + A IL
Sbjct: 256 LLLESFIFDFSQEIYGQRCTVSFFDYLRPEIKFKDIEKLKIYMGEDEKKARKILESSYPL 315
Query: 514 EKRGRGIC 521
+R R IC
Sbjct: 316 SERDRIIC 323
>gi|254780744|ref|YP_003065157.1| ABC transporter nucleotide binding/ATPase protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 262
Score = 25.0 bits (53), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 16 IVAHIDHGKSTLADR-FIQHCRGLTEREMSSQVLDNMDIER 55
I H H TL DR +I H G+ +++DN D+ R
Sbjct: 213 ITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQDVRR 253
>gi|254780271|ref|YP_003064684.1| ATP-dependent protease ATP-binding subunit ClpX [Candidatus
Liberibacter asiaticus str. psy62]
Length = 424
Score = 24.6 bits (52), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 502 DALSILVHRSVSEKRG-RGICEKLKNLIPQQMFQIAIQAAIGGRIIARETVKAR 554
DAL + +++ K G RG+ L+ ++ MF++ + + II+ + VK +
Sbjct: 352 DALREIARCAIAHKTGARGLRSILEKILLDTMFELPMLKGVSSVIISDDVVKGK 405
>537021.9.peg.473_1
Length = 165
Score = 23.9 bits (50), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 36/76 (47%), Gaps = 10/76 (13%)
Query: 414 QVTIITPNEYLGSILKLCQERRGIQIDMSHLDNRAMIV--YELPLNEVIF------DFYD 465
+++ TP+ Y +++LC++ + M + R + V +EL EV F DF +
Sbjct: 54 RLSACTPDNYTKQLIELCEKNHDYK--MVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIE 111
Query: 466 RLKSVSKGYASFDYNV 481
L + K + D+ +
Sbjct: 112 NLATKLKNWTGEDWEI 127
>gi|254780414|ref|YP_003064827.1| GMP synthase [Candidatus Liberibacter asiaticus str. psy62]
Length = 520
Score = 23.9 bits (50), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 469 SVSKGYASFDYNVIDYRDSDLVKLTILVNNET 500
S+ KGY +F V+D + + KL +V+ ET
Sbjct: 270 SLFKGYPNFPLRVVDASERFIRKLKNIVDPET 301
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.319 0.136 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 371,347
Number of Sequences: 1233
Number of extensions: 15424
Number of successful extensions: 63
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 42
Number of HSP's gapped (non-prelim): 22
length of query: 606
length of database: 328,796
effective HSP length: 79
effective length of query: 527
effective length of database: 231,389
effective search space: 121942003
effective search space used: 121942003
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 41 (20.4 bits)