HHsearch alignment for GI: 254780322 and conserved domain: COG1189
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis].
Probab=97.32 E-value=0.0021 Score=39.19 Aligned_cols=152 Identities=13% Similarity=0.110 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHHCCC--CCCCEEEECCCCCHHHHHHHHHCCCCEEEEECCHHHHHHHHHH----CCC---CCHHHH---
Q ss_conf 9999999978986368--9870999859985899999862697089972001135775311----001---200110---
Q gi|254780322|r 30 DRVAKEIAFRLNMINQ--TFENALELHGITGIVGYTCMETKKIHRMIRAEISTEFSTLKRE----VIS---CPLEEI--- 97 (273)
Q Consensus 30 ~~~a~~l~~~l~~~~~--~~~~vLdlGcGtG~~~~~l~~~~~~~~v~~~D~s~~~~~~~~~----~~~---~d~e~l--- 97 (273)
T Consensus 61 SRG~~KL~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~gA-k~VyavDVG~~Ql~~kLR~d~rV~~~E~tN~r~l~~~ 139 (245)
T COG1189 61 SRGGLKLEKALEEFELDVKGKVVLDIGSSTGGFTDVLLQRGA-KHVYAVDVGYGQLHWKLRNDPRVIVLERTNVRYLTPE 139 (245)
T ss_pred CCHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHCCC-CEEEEEECCCCCCCHHHHCCCCEEEEECCCHHHCCHH
T ss_conf 618999999999648688997899826787629999987587-4799997037743786735984799852783118987
Q ss_pred CCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCC-CCCCCHHH
Q ss_conf 14333522266666742223469999999998187870898406867633477889987545426866421-67459999
Q gi|254780322|r 98 PSISQSVDLILSPLNLHIINDTLEMFSKINHMLKPGGMFLAAIPGIGTLHELRKALLKAETELTGGASPRV-IPFMDIKS 176 (273)
Q Consensus 98 ~~~~~sfDli~s~~~l~w~~d~~~~l~~~~r~LkpgG~~~~s~~~~~~~~el~~~~~~a~~~~~~~~~~~~-~~~~~~~~ 176 (273)
T Consensus 140 ~~~~-~~d~~v~DvSFISL---~~iLp~l~~l~~~~~~~v~Lv--KPQFEagr~----~v~--kkGvv~d~~~~~~v~~~ 207 (245)
T COG1189 140 DFTE-KPDLIVIDVSFISL---KLILPALLLLLKDGGDLVLLV--KPQFEAGRE----QVG--KKGVVRDPKLHAEVLSK 207 (245)
T ss_pred HCCC-CCCEEEEEEEHHHH---HHHHHHHHHHCCCCCEEEEEE--CCHHHHHHH----HCC--CCCEECCCCHHHHHHHH
T ss_conf 8176-77847996423319---988899997427886389973--655554043----227--68634480158999999
Q ss_pred HHHHHHHCCCCCEEEEEE
Q ss_conf 999998508985467731
Q gi|254780322|r 177 AGTLMEKSGFISPIIDQD 194 (273)
Q Consensus 177 ~~~ll~~agf~~~~~~~~ 194 (273)
T Consensus 208 i~~~~~~~g~~~~gl~~S 225 (245)
T COG1189 208 IENFAKELGFQVKGLIKS 225 (245)
T ss_pred HHHHHHHCCCEEEEEECC
T ss_conf 998886459578655726