HHsearch alignment for GI: 254780322 and conserved domain: COG2813
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis].
Probab=99.03 E-value=1.2e-09 Score=75.56 Aligned_cols=109 Identities=17% Similarity=0.187 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCCC----------CCHHHHCC
Q ss_conf 99999999789863689870999859985899999862697089972001135775311001----------20011014
Q gi|254780322|r 30 DRVAKEIAFRLNMINQTFENALELHGITGIVGYTCMETKKIHRMIRAEISTEFSTLKREVIS----------CPLEEIPS 99 (273)
Q Consensus 30 ~~~a~~l~~~l~~~~~~~~~vLdlGcGtG~~~~~l~~~~~~~~v~~~D~s~~~~~~~~~~~~----------~d~e~l~~ 99 (273)
T Consensus 144 D~GS~lLl~~l~~~--~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v 221 (300)
T COG2813 144 DKGSRLLLETLPPD--LGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEPV 221 (300)
T ss_pred CHHHHHHHHHCCCC--CCCCEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCCCCC
T ss_conf 83889999737755--6996887078842999999986898728998266999999887699739876379981244665
Q ss_pred CCCCCCHHHHHHHHHCCCCH-----HHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 33352226666674222346-----9999999998187870898406
Q gi|254780322|r 100 ISQSVDLILSPLNLHIINDT-----LEMFSKINHMLKPGGMFLAAIP 141 (273)
Q Consensus 100 ~~~sfDli~s~~~l~w~~d~-----~~~l~~~~r~LkpgG~~~~s~~ 141 (273)
T Consensus 222 ~~-kfd~IisNPPfh~G~~v~~~~~~~ii~~A~~~L~~gGeL~iVan 267 (300)
T COG2813 222 EG-KFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN 267 (300)
T ss_pred CC-CCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf 44-00689848884677101678899999999976045977999975