HHsearch alignment for GI: 254780322 and conserved domain: KOG1122

Probab=94.82  E-value=0.11  Score=29.23  Aligned_cols=97  Identities=16%  Similarity=0.125  Sum_probs=62.6

Q ss_pred             CCCCCCCEEEECCCCCHHHHHHHHH-CCCCEEEEECCHHHHHHHHH-----------HCCCCCHHHHC---CCCCCCCHH
Q ss_conf             3689870999859985899999862-69708997200113577531-----------10012001101---433352226
Q gi|254780322|r   43 INQTFENALELHGITGIVGYTCMET-KKIHRMIRAEISTEFSTLKR-----------EVISCPLEEIP---SISQSVDLI  107 (273)
Q Consensus        43 ~~~~~~~vLdlGcGtG~~~~~l~~~-~~~~~v~~~D~s~~~~~~~~-----------~~~~~d~e~l~---~~~~sfDli  107 (273)
T Consensus       238 ~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~~~-~fDRV  316 (460)
T KOG1122         238 DPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKEFPG-SFDRV  316 (460)
T ss_pred             CCCCCCEECCHHCCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCC-CCCEE
T ss_conf             79988711212107995077899987277469961354377999998899748774489736763255333676-42314


Q ss_pred             H-----HH-------HHHHCCCC----------HHHHHHHHHHHHCCCCEEEEEE
Q ss_conf             6-----66-------67422234----------6999999999818787089840
Q gi|254780322|r  108 L-----SP-------LNLHIIND----------TLEMFSKINHMLKPGGMFLAAI  140 (273)
Q Consensus       108 ~-----s~-------~~l~w~~d----------~~~~l~~~~r~LkpgG~~~~s~  140 (273)
T Consensus       317 LLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYST  371 (460)
T KOG1122         317 LLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYST  371 (460)
T ss_pred             EECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf             5348777775554551013301299998727999999999873115770899985