HHsearch alignment for GI: 254780322 and conserved domain: PRK00274
>PRK00274 ksgA dimethyladenosine transferase; Reviewed.
Probab=97.46 E-value=0.00028 Score=44.26 Aligned_cols=88 Identities=15% Similarity=0.210 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHCCCCCCHHHHH-HHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHCCCCEEEEECCHHHHHHHH
Q ss_conf 9999857766317462206899-999999997898636898709998599858999998626970899720011357753
Q gi|254780322|r 8 QLINRNRLRSFRQKDFSVYFLL-DRVAKEIAFRLNMINQTFENALELHGITGIVGYTCMETKKIHRMIRAEISTEFSTLK 86 (273)
Q Consensus 8 ~~i~~~~~ra~~~~~~~~~~l~-~~~a~~l~~~l~~~~~~~~~vLdlGcGtG~~~~~l~~~~~~~~v~~~D~s~~~~~~~ 86 (273)
T Consensus 4 ~~l~~~~~~~kK~lG--QnFL~d~~ii~kIv~~~-~~~-~~d~VlEIGpG~G~LT~~Ll~~~~--~v~aiEiD~~l~~~L 77 (267)
T PRK00274 4 ELLEHYGHRAKKSLG--QNFLIDENIIDKIVRAA-DLQ-PGDRVLEIGPGLGALTEPLLERAA--KVTAIEIDRDLAPIL 77 (267)
T ss_pred HHHHHCCCCCCCCCC--CCCCCCHHHHHHHHHHC-CCC-CCCEEEEECCCCCHHHHHHHHHCC--CEEEEECCHHHHHHH
T ss_conf 999876999887778--22148989999999960-899-999079963888889999996268--058863688999998
Q ss_pred H-----HCCCCCHHHHCCCC
Q ss_conf 1-----10012001101433
Q gi|254780322|r 87 R-----EVISCPLEEIPSIS 101 (273)
Q Consensus 87 ~-----~~~~~d~e~l~~~~ 101 (273)
T Consensus 78 ~~~~~~~ii~~D~L~~~~~~ 97 (267)
T PRK00274 78 RETDNLTIIEGDALKVDLEE 97 (267)
T ss_pred HHCCCEEEEECHHHHCCHHH
T ss_conf 50478699965066478677